Os02g0728500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor protein kinase-like protein.
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Os02g0728500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.69 | 0.675 | 5.23 | 0.709 | 1.73 | 0.00888 | 0.53 | -4.31 | 0.0283 | 0.733 | 999.8 | 11816 | -- | -- |
| 215.03 | 0.683 | 5.18 | 1.02 | 1.76 | -0.602 | 0.834 | -- | 0.0538 | 0.5 | 998.9 | 16563 | -- | -- |
| 207.51 | 0.671 | 5.24 | 0.693 | 1.73 | 0.00893 | -- | -4.33 | 0.0239 | 0.718 | 998.9 | 11849 | -- | -- |
| 214.31 | 0.682 | 5.17 | 0.875 | 1.72 | -0.704 | -- | -- | 0.000956 | 0.647 | 999.2 | 16586 | -- | -- |
| 393.8 | 0.924 | 5.22 | 0.783 | -- | -0.0643 | -- | -4.08 | 0.0482 | -- | 999 | 12030 | -- | -- |
| 229.44 | 0.71 | 5.16 | 0.771 | 1.73 | -- | 0.568 | -- | 0.0699 | 0.754 | -- | -- | -- | -- |
| 230.81 | 0.711 | 5.16 | 0.75 | 1.73 | -- | -- | -- | 0.0671 | 0.736 | -- | -- | -- | -- |
| 397.09 | 0.928 | 5.17 | 0.925 | -- | -0.797 | -- | -- | -0.0429 | -- | 998.8 | 17376 | -- | -- |
| 228.57 | 0.704 | 5.22 | -- | 1.7 | -0.746 | -- | -- | -0.196 | 0.726 | 1003 | 17579 | -- | -- |
| 417.71 | 0.955 | 5.13 | 0.812 | -- | -- | -- | -- | 0.0982 | -- | -- | -- | -- | -- |
| 245.62 | 0.733 | 5.18 | -- | 1.74 | -- | -- | -- | -0.0164 | 0.756 | -- | -- | -- | -- |
| 413.15 | 0.947 | 5.21 | -- | -- | -0.877 | -- | -- | -0.214 | -- | 1003 | 17530 | -- | -- |
| 435.11 | 0.974 | 5.15 | -- | -- | -- | -- | -- | 0.00812 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 6 | 202.91 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 8 | 203.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 9 | 203.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 13 | 203.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 14 | 203.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 16 | 204.01 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 9 |
| 25 | 204.47 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 26 | 204.61 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 27 | 204.66 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 30 | 204.78 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 53 | 204.99 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 62 | 205.01 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 63 | 205.01 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 66 | 205.03 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 112 | 205.07 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 125 | 205.11 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 132 | 205.17 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 141 | 205.17 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 145 | 205.19 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 192 | 205.32 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 195 | 205.34 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 209 | 205.39 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 211 | 205.39 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 213 | 205.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 217 | 205.51 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 240 | 205.65 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 245 | 205.69 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 267 | 205.79 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 272 | 205.85 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 353 | 206.82 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 356 | 206.82 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 374 | 206.94 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 396 | 207.18 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 399 | 207.21 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 408 | 207.28 | wind | 9.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 409 | 207.28 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 412 | 207.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 414 | 207.32 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 418 | 207.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 443 | 207.53 | wind | 9.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 453 | 207.59 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 457 | 207.61 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 476 | 207.68 | wind | 9.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 503 | 207.82 | wind | 9.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 512 | 207.87 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 514 | 207.87 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 529 | 207.96 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 567 | 208.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 603 | 208.27 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 22 | NA |
| 612 | 208.31 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 15 |
| 635 | 208.39 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 666 | 208.51 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 10 |
| 677 | 208.54 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 729 | 208.73 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 740 | 208.76 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 768 | 208.85 | wind | 9.0 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 770 | 208.85 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 795 | 208.92 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 815 | 208.97 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 835 | 209.03 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 842 | 209.04 | wind | 9.0 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 850 | 209.07 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 865 | 209.10 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 888 | 209.15 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 935 | 209.26 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 953 | 209.29 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 958 | 209.30 | wind | 9.0 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 974 | 209.32 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 976 | 209.32 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 994 | 209.34 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 22 | NA |