Os02g0727200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0727200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61 | 0.367 | 10 | 0.663 | 1.22 | -1.48 | 0.0633 | -0.217 | 0.0855 | 23.5 | 28 | 4175 | -- | -- |
| 61.05 | 0.364 | 10 | 0.636 | 1.21 | -1.44 | 0.0764 | -- | 0.0843 | 23.5 | 28.46 | 4150 | -- | -- |
| 61.02 | 0.364 | 10 | 0.663 | 1.22 | -1.48 | -- | -0.228 | 0.0855 | 23.5 | 27.99 | 4174 | -- | -- |
| 61.06 | 0.364 | 10 | 0.629 | 1.21 | -1.44 | -- | -- | 0.0848 | 23.5 | 28.53 | 4143 | -- | -- |
| 137.87 | 0.547 | 10 | 0.487 | -- | -1.79 | -- | 0.714 | 0.0127 | -- | 31.87 | 2363 | -- | -- |
| 99.23 | 0.467 | 9.97 | 1.33 | 1.29 | -- | 0.0967 | -- | 0.426 | 23.7 | -- | -- | -- | -- |
| 99.27 | 0.467 | 9.97 | 1.33 | 1.29 | -- | -- | -- | 0.426 | 23.7 | -- | -- | -- | -- |
| 137.84 | 0.547 | 10 | 0.66 | -- | -1.8 | -- | -- | 0.0178 | -- | 30.25 | 2364 | -- | -- |
| 68.11 | 0.384 | 10.1 | -- | 1.24 | -1.72 | -- | -- | -0.158 | 23.7 | 48.89 | 10718 | -- | -- |
| 203.94 | 0.667 | 9.94 | 1.36 | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
| 145.6 | 0.564 | 10 | -- | 1.31 | -- | -- | -- | 0.278 | 23.8 | -- | -- | -- | -- |
| 147.03 | 0.565 | 10.1 | -- | -- | -2.08 | -- | -- | -0.133 | -- | 29.56 | 2383 | -- | -- |
| 252.93 | 0.742 | 9.97 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 3 | 59.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 10 |
| 15 | 60.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 24 | 60.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 32 | 60.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 37 | 60.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 57 | 60.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 15 |
| 67 | 60.60 | temperature | 25 | 4320 | < th | dose independent | sin | 0 | NA |
| 78 | 60.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 83 | 60.69 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 8 |
| 87 | 60.71 | temperature | 25 | 4320 | > th | dose independent | sin | 0 | NA |
| 121 | 60.79 | temperature | 30 | 4320 | < th | dose dependent | sin | 4 | NA |
| 202 | 60.96 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 15 |
| 212 | 60.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 213 | 60.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 223 | 61.00 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 8 |
| 224 | 61.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 276 | 61.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 12 |
| 289 | 61.08 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 325 | 61.12 | temperature | 10 | 4320 | > th | dose dependent | sin | 5 | NA |
| 335 | 61.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 390 | 61.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 23 |
| 408 | 61.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 412 | 61.22 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 499 | 61.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 519 | 61.30 | temperature | 25 | 4320 | < th | dose dependent | rect. | 14 | 20 |
| 607 | 61.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 640 | 61.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 722 | 61.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 726 | 61.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 798 | 61.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 825 | 61.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 23 |
| 826 | 61.54 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 854 | 61.56 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 874 | 61.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 918 | 61.60 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 972 | 61.63 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 983 | 61.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 19 |
| 987 | 61.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 23 |