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Os02g0725600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF425 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.8 (0.0264) R2 : 0.669
β1 : 1.14 (0.0979) R2dD : 0.106 R2D : 0.0602
β2 : 1.81 (0.0687) R2dC : 0.506 R2C : 0.514
β3 : -0.683 (0.0701) R2dE : 0.0764 R2E : 0.0255
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.227 (0.0576) R2dN8 : 0.0158 R2N8 : 0.0114
σ : 0.491
deviance : 111.22
__
_____
C
peak time of C : 18.1
E
wheather : temperature
threshold : 30.76
memory length : 1230
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.81 0.49 9.94 -0.117 1.79 0.18 0.171 -7.62 -0.226 18.1 30.76 1229 -- --
111.46 0.492 9.8 1.1 1.79 -0.689 0.199 -- -0.257 18 31.03 1231 -- --
108.84 0.486 9.94 -0.0827 1.79 0.162 -- -7.47 -0.224 18.1 31 1229 -- --
111.22 0.491 9.8 1.14 1.81 -0.683 -- -- -0.227 18.1 30.76 1230 -- --
274.35 0.771 9.92 -0.109 -- 0.0465 -- -7.41 -0.291 -- 30.83 1277 -- --
133.47 0.542 9.77 0.969 1.84 -- 0.289 -- -0.0965 17.9 -- -- -- --
133.68 0.541 9.77 0.967 1.84 -- -- -- -0.0953 17.9 -- -- -- --
277.69 0.776 9.76 1.18 -- -0.802 -- -- -0.248 -- 30.85 5578 -- --
144.22 0.559 9.81 -- 1.8 -0.545 -- -- -0.321 18.1 31.65 1204 -- --
309.73 0.822 9.74 0.911 -- -- -- -- -0.138 -- -- -- -- --
158.3 0.589 9.79 -- 1.83 -- -- -- -0.203 17.9 -- -- -- --
310.53 0.821 9.78 -- -- -0.636 -- -- -0.38 -- 30.6 5577 -- --
331.64 0.85 9.76 -- -- -- -- -- -0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.93 temperature 15.0 10 > th dose dependent rect. 15 18
5 101.11 temperature 10.0 270 > th dose dependent rect. 14 17
43 104.42 temperature 15.0 90 > th dose dependent rect. 3 6
44 104.44 temperature 10.0 270 > th dose dependent rect. 1 7
54 105.06 temperature 15.0 10 > th dose dependent rect. 3 6
104 106.64 temperature 20.0 30 > th dose independent rect. 15 18
113 106.86 wind 5.0 90 < th dose independent rect. 3 6
117 106.91 wind 5.0 270 < th dose independent rect. 1 7
127 107.14 wind 9.0 90 < th dose dependent rect. 3 6
136 107.28 atmosphere 1000.0 270 > th dose independent rect. 19 8
152 107.77 precipitation 0.1 90 < th dose independent rect. 3 6
153 107.77 precipitation 0.1 90 < th dose dependent rect. 3 6
154 107.78 precipitation 0.1 270 < th dose independent rect. 3 15
156 107.78 precipitation 0.1 270 < th dose dependent rect. 3 15
158 107.84 radiation 1.0 270 < th dose dependent rect. 18 9
159 107.85 atmosphere 1000.0 30 > th dose independent rect. 20 8
161 107.85 temperature 30.0 270 < th dose dependent rect. 18 9
166 107.89 radiation 30.0 90 < th dose independent rect. 3 6
169 107.93 atmosphere 995.0 30 > th dose dependent rect. 20 8
173 107.97 wind 9.0 10 < th dose dependent rect. 4 5
175 108.00 wind 5.0 270 < th dose independent rect. 4 1
179 108.10 radiation 1.0 270 < th dose independent rect. 18 9
184 108.16 temperature 30.0 90 < th dose independent rect. 3 6
186 108.16 temperature 20.0 10 > th dose dependent rect. 23 10
188 108.17 radiation 1.0 270 < th dose dependent rect. 5 22
192 108.24 wind 9.0 90 < th dose independent rect. 9 18
196 108.27 temperature 25.0 1440 > th dose dependent rect. 14 2
202 108.31 humidity 60.0 90 > th dose independent rect. 3 6
209 108.45 precipitation 0.1 270 < th dose independent rect. 1 7
210 108.45 precipitation 0.1 270 < th dose dependent rect. 1 7
216 108.49 atmosphere 995.0 30 > th dose independent rect. 9 19
217 108.50 temperature 30.0 270 < th dose independent rect. 18 9
222 108.51 temperature 10.0 90 > th dose independent rect. 3 6
225 108.51 atmosphere 995.0 90 > th dose independent rect. 3 6
226 108.51 atmosphere 1015.0 90 < th dose independent rect. 3 6
227 108.51 temperature 10.0 90 > th dose independent rect. 9 18
231 108.53 precipitation 0.1 270 < th dose independent rect. 14 17
233 108.53 wind 9.0 270 < th dose dependent rect. 1 7
234 108.53 precipitation 0.1 270 < th dose dependent rect. 14 17
243 108.62 humidity 60.0 270 > th dose independent rect. 18 9
245 108.63 wind 7.0 270 < th dose dependent rect. 4 1
250 108.67 precipitation 0.1 10 < th dose independent rect. 4 5
252 108.67 precipitation 0.1 10 < th dose dependent rect. 4 5
255 108.69 temperature 30.0 30 < th dose dependent rect. 20 8
256 108.69 temperature 10.0 270 > th dose dependent rect. 12 10
284 108.86 wind 9.0 10 < th dose independent rect. 9 19
290 108.89 precipitation 0.1 90 < th dose independent rect. 9 18
291 108.89 precipitation 0.1 90 < th dose dependent rect. 9 18
303 108.93 radiation 30.0 90 < th dose independent rect. 3 8
316 109.01 atmosphere 995.0 30 > th dose dependent rect. 9 19
319 109.04 radiation 20.0 270 < th dose independent rect. 1 7
325 109.10 temperature 10.0 270 > th dose independent rect. 18 9
330 109.10 temperature 10.0 270 > th dose independent rect. 3 15
331 109.10 atmosphere 1015.0 270 < th dose independent rect. 3 15
332 109.12 wind 9.0 270 < th dose independent rect. 18 9
333 109.13 atmosphere 1015.0 90 < th dose dependent rect. 15 17
335 109.14 wind 9.0 270 < th dose independent rect. 7 7
340 109.16 radiation 40.0 10 < th dose independent rect. 4 16
363 109.28 temperature 15.0 270 > th dose independent rect. 7 7
368 109.30 temperature 10.0 270 > th dose dependent rect. 4 1
381 109.36 precipitation 0.1 270 < th dose independent rect. 7 7
382 109.36 precipitation 0.1 270 < th dose dependent rect. 7 7
383 109.36 temperature 25.0 1440 > th dose dependent rect. 12 19
385 109.37 temperature 25.0 1440 > th dose dependent rect. 12 16
392 109.39 radiation 40.0 90 < th dose independent rect. 4 15
395 109.41 atmosphere 995.0 270 > th dose independent rect. 7 7
396 109.41 atmosphere 1015.0 270 < th dose independent rect. 7 7
397 109.41 temperature 10.0 270 > th dose independent rect. 14 17
431 109.53 temperature 10.0 270 > th dose independent rect. 1 7
433 109.53 temperature 30.0 270 < th dose independent rect. 1 7
434 109.53 humidity 50.0 270 > th dose independent rect. 1 7
436 109.53 atmosphere 995.0 270 > th dose independent rect. 1 7
437 109.53 atmosphere 1015.0 270 < th dose independent rect. 1 7
440 109.53 atmosphere 1000.0 10 > th dose dependent rect. 4 5
450 109.57 wind 9.0 270 < th dose independent rect. 14 17
512 109.79 precipitation 0.1 270 < th dose independent rect. 4 1
513 109.79 precipitation 0.1 270 < th dose dependent rect. 4 1
533 109.86 humidity 50.0 270 > th dose independent rect. 7 19
540 109.88 precipitation 0.1 270 < th dose independent rect. 18 9
541 109.88 precipitation 0.1 270 < th dose dependent rect. 18 9
547 109.92 wind 9.0 270 < th dose independent rect. 7 19
550 109.92 radiation 40.0 270 < th dose dependent rect. 2 6
555 109.94 wind 9.0 270 < th dose independent rect. 3 15
568 110.00 radiation 40.0 90 < th dose independent rect. 15 18
571 110.01 atmosphere 995.0 270 > th dose independent rect. 7 19
613 110.09 temperature 10.0 270 > th dose independent rect. 7 19
628 110.13 precipitation 0.1 10 < th dose independent rect. 15 18
630 110.13 precipitation 0.1 10 < th dose dependent rect. 15 18
635 110.16 atmosphere 1015.0 270 < th dose independent rect. 14 17
644 110.19 humidity 50.0 270 > th dose independent rect. 8 17
646 110.20 atmosphere 995.0 90 > th dose independent rect. 9 6
647 110.20 temperature 25.0 1440 > th dose dependent sin 16 NA
649 110.21 atmosphere 1015.0 10 < th dose independent rect. 15 18
666 110.25 temperature 15.0 90 > th dose independent rect. 9 6
669 110.25 temperature 10.0 720 > th dose dependent rect. 12 12
671 110.26 precipitation 0.1 90 < th dose independent rect. 9 6
674 110.26 precipitation 0.1 90 < th dose dependent rect. 9 6
683 110.29 radiation 1.0 270 > th dose independent rect. 7 7
691 110.31 atmosphere 1015.0 90 < th dose independent rect. 9 6
696 110.32 wind 9.0 90 < th dose independent rect. 9 6
704 110.36 humidity 80.0 270 > th dose independent rect. 4 1
730 110.44 radiation 1.0 10 > th dose independent rect. 9 6
752 110.51 temperature 10.0 270 > th dose independent rect. 4 1
754 110.51 temperature 30.0 270 < th dose independent rect. 4 1
755 110.51 humidity 50.0 270 > th dose independent rect. 4 1
758 110.51 atmosphere 995.0 270 > th dose independent rect. 4 1
759 110.51 atmosphere 1010.0 270 < th dose independent rect. 4 1
761 110.51 radiation 20.0 270 < th dose independent rect. 4 1
769 110.51 temperature 10.0 270 > th dose independent rect. 5 23
784 110.53 radiation 1.0 270 < th dose dependent rect. 4 1
787 110.54 radiation 40.0 270 < th dose dependent rect. 4 1
795 110.55 radiation 40.0 270 < th dose dependent rect. 3 4
798 110.56 temperature 10.0 10 > th dose independent rect. 9 6
800 110.56 atmosphere 995.0 10 > th dose independent rect. 9 6
801 110.56 atmosphere 1015.0 10 < th dose independent rect. 9 6
802 110.56 precipitation 0.1 10 < th dose independent rect. 9 6
805 110.56 precipitation 0.1 10 < th dose dependent rect. 9 6
807 110.56 radiation 40.0 270 < th dose dependent rect. 1 8
839 110.66 radiation 1.0 270 < th dose independent rect. 4 1
841 110.66 wind 1.0 90 > th dose independent rect. 9 6
869 110.72 wind 9.0 10 < th dose independent rect. 9 6
903 110.78 precipitation 0.1 270 < th dose independent rect. 7 19
908 110.78 precipitation 0.1 270 < th dose dependent rect. 7 19
942 110.88 temperature 10.0 1440 > th dose independent rect. 10 6
946 110.88 temperature 10.0 1440 > th dose independent rect. 16 18
981 110.92 humidity 50.0 270 > th dose dependent rect. 4 1
983 110.93 wind 9.0 10 < th dose independent rect. 15 18
996 110.95 wind 9.0 90 < th dose dependent rect. 15 18