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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0725400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nitrate-induced NOI family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0441) R2 : 0.791
β1 : -1.41 (0.215) R2dD : 0.0451 R2D : 0.147
β2 : 3.94 (0.142) R2dC : 0.721 R2C : 0.149
β3 : -2.96 (0.187) R2dE : 0.264 R2E : -0.278
β4 : -8.34 (0.491) R2dD*C : 0.18 R2D*C : 0.13
β5 : 7.21 (0.833) R2dD*E : 0.0842 R2D*E : 0.104
γ1 : 0.044 (0.1) R2dN8 : 0.000168 R2N8 : -0.0138
σ : 0.744
deviance : 250.91
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_____
C
peak time of C : 8.26
E
wheather : temperature
threshold : 18.71
memory length : 334
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.91 0.744 3.63 -1.41 3.94 -2.96 -8.34 7.21 0.044 8.26 18.71 334 1.3 --
292.93 0.797 3.79 -2.52 4.09 -2.86 -6.43 -- -0.349 8.21 17.97 288 1.13 --
405.34 0.938 3.77 -3.04 4.19 -3.62 -- -1.16 -0.232 8.91 18.19 324 0.348 --
400.54 0.932 3.74 -2.82 4.8 -3.93 -- -- -0.307 8.66 16.5 252 0.0485 --
759.55 1.29 4.12 -4.28 -- 1.76 -- -4.83 -1.23 -- 18.19 324 0.348 --
414.07 0.954 3.93 -3.29 2.4 -- -6.7 -- -0.847 8.16 -- -- -- --
550.09 1.1 3.93 -3.48 2.4 -- -- -- -0.84 8.31 -- -- -- --
558.92 1.1 4.01 -3.55 -- 2.44 -- -- -0.869 -- -355.1 968 5.77 --
593.37 1.13 3.59 -- 6.06 -5.64 -- -- 0.175 8.65 15.16 273 0.229 --
869.67 1.38 3.99 -3.46 -- -- -- -- -0.814 -- -- -- -- --
868.65 1.38 3.84 -- 2.38 -- -- -- -0.453 8.42 -- -- -- --
864.61 1.37 3.66 -- -- -4.03 -- -- -0.0129 -- -52.33 1381 9.17e-07 --
1185.68 1.61 3.91 -- -- -- -- -- -0.43 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.02 temperature 20 270 > th dose dependent sin 7 NA
3 265.06 temperature 20 270 > th dose dependent rect. 22 15
12 271.24 temperature 30 270 < th dose dependent sin 7 NA
14 271.97 temperature 30 270 < th dose dependent rect. 1 10
41 281.78 temperature 15 720 > th dose dependent rect. 22 7
42 281.89 temperature 20 720 > th dose dependent rect. 23 5
46 282.99 temperature 25 720 < th dose dependent rect. 23 6
68 285.79 temperature 20 720 > th dose independent rect. 22 7
75 286.22 temperature 20 720 < th dose independent rect. 23 6
82 286.64 temperature 20 720 < th dose independent rect. 22 8
166 292.70 temperature 20 720 < th dose independent rect. 24 3
167 292.82 temperature 20 720 < th dose independent sin 10 NA
183 293.32 temperature 20 720 > th dose independent sin 10 NA
189 293.62 temperature 25 720 < th dose dependent sin 10 NA
208 294.29 temperature 20 720 < th dose independent rect. 1 1
249 296.06 temperature 20 720 > th dose dependent sin 10 NA
268 296.66 temperature 20 720 > th dose independent rect. 19 14
285 297.15 temperature 20 720 > th dose independent rect. 17 16
412 301.08 temperature 20 270 > th dose independent rect. 22 16
473 303.10 temperature 20 720 > th dose independent rect. 1 2
652 308.00 temperature 25 270 < th dose independent rect. 3 9
707 309.31 temperature 20 720 > th dose independent rect. 12 21