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Os02g0725000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase G11A (EC 2.7.1.-) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.53 (0.0484) R2 : 0.738
β1 : -2.43 (0.177) R2dD : 0.101 R2D : 0.088
β2 : 4.82 (0.149) R2dC : 0.811 R2C : 0.0944
β3 : -5.82 (0.232) R2dE : 0.536 R2E : -0.191
β4 : 3.42 (0.561) R2dD*C : 0.0194 R2D*C : 0.00278
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.159 (0.103) R2dN8 : -0.00145 R2N8 : 0.00108
σ : 0.903
deviance : 375.85
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_____
C
peak time of C : 7.07
E
wheather : humidity
threshold : 48.01
memory length : 876
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
369.55 0.903 9.53 -2.26 4.88 -6.39 4.19 -2.66 0.0581 6.36 39.83 855 10.7 --
375.85 0.903 9.53 -2.43 4.82 -5.82 3.42 -- 0.159 7.07 48.01 876 10.6 --
400.88 0.933 9.56 -2.32 4.13 -6.04 -- -0.411 0.037 6.27 37.6 888 11.6 --
396.97 0.928 9.54 -2.33 3.81 -5.09 -- -- 0.0426 7.36 52.24 888 11.6 --
407.8 0.941 9.67 -2.46 -- -5.77 -- -3.84 0.00253 -- 15.69 937 16 --
643.87 1.19 9.56 -2.27 3.29 -- 2.28 -- 0.0295 9.57 -- -- -- --
663.12 1.21 9.56 -2.18 3.28 -- -- -- 0.0339 9.61 -- -- -- --
425.84 0.961 9.67 -2.58 -- -5.66 -- -- -0.0129 -- 11.2 1018 16.5 --
534.34 1.08 9.49 -- 4.21 -5.12 -- -- 0.239 7.45 54.27 884 11.2 --
1299.96 1.68 9.65 -2.21 -- -- -- -- 0.0406 -- -- -- -- --
788.3 1.31 9.51 -- 3.28 -- -- -- 0.277 9.66 -- -- -- --
597.39 1.14 9.59 -- -- -5.43 -- -- 0.278 -- 10.57 962 16.1 --
1428.3 1.76 9.6 -- -- -- -- -- 0.285 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 366.34 humidity 50 720 > th dose dependent rect. 15 11
2 368.30 humidity 50 720 > th dose dependent rect. 15 6
12 373.11 humidity 70 720 > th dose independent rect. 15 12
20 377.08 humidity 60 720 > th dose dependent rect. 17 2
22 377.23 humidity 70 720 > th dose independent rect. 15 5
32 380.08 humidity 50 720 > th dose dependent sin 16 NA
63 387.15 humidity 90 720 < th dose dependent rect. 16 7
81 389.52 humidity 70 720 > th dose independent sin 13 NA
107 393.60 humidity 70 720 > th dose independent rect. 15 18
141 398.96 humidity 90 720 < th dose dependent sin 16 NA
163 401.74 humidity 70 720 < th dose independent sin 13 NA
171 402.69 temperature 30 720 < th dose independent rect. 16 10
256 408.21 humidity 80 1440 < th dose independent rect. 7 13
261 408.41 humidity 90 1440 < th dose dependent rect. 10 13
267 408.53 humidity 90 1440 < th dose dependent rect. 6 17
295 409.03 humidity 90 1440 < th dose dependent sin 19 NA
358 410.59 humidity 80 1440 > th dose independent rect. 7 14
369 410.78 humidity 70 720 < th dose independent rect. 15 5
402 411.08 temperature 30 720 < th dose independent rect. 16 3
505 413.13 humidity 80 720 < th dose dependent rect. 16 16
528 413.44 humidity 50 720 > th dose dependent rect. 14 20
543 413.85 humidity 80 1440 < th dose dependent rect. 14 20
550 413.88 humidity 80 1440 < th dose dependent rect. 15 18
565 414.22 temperature 25 720 > th dose dependent sin 14 NA
636 415.36 humidity 80 1440 < th dose dependent rect. 11 22
757 416.88 radiation 10 720 < th dose dependent rect. 16 10
786 417.24 humidity 80 720 < th dose independent rect. 11 10
835 417.70 humidity 80 1440 < th dose independent sin 0 NA
937 418.26 humidity 80 1440 < th dose dependent no NA NA