Os02g0722800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os02g0722800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.48 | 0.264 | 10.2 | 0.549 | 0.262 | -0.703 | 0.193 | -0.516 | 0.102 | 3.84 | 29.24 | 125 | -- | -- |
| 31.77 | 0.263 | 10.2 | 0.484 | 0.252 | -0.66 | 0.0211 | -- | 0.0889 | 3.84 | 29.48 | 119 | -- | -- |
| 31.57 | 0.262 | 10.2 | 0.533 | 0.26 | -0.698 | -- | -0.395 | 0.0959 | 3.82 | 29.26 | 126 | -- | -- |
| 31.75 | 0.262 | 10.2 | 0.47 | 0.256 | -0.686 | -- | -- | 0.0812 | 3.84 | 29.4 | 124 | -- | -- |
| 32.25 | 0.265 | 10.2 | 0.591 | -- | -0.83 | -- | -0.852 | 0.147 | -- | 22.76 | 353 | -- | -- |
| 38.11 | 0.289 | 10.2 | 0.631 | 0.0516 | -- | 0.0642 | -- | 0.219 | 7.38 | -- | -- | -- | -- |
| 38.12 | 0.289 | 10.2 | 0.633 | 0.0526 | -- | -- | -- | 0.219 | 6.87 | -- | -- | -- | -- |
| 32.96 | 0.267 | 10.2 | 0.508 | -- | -0.624 | -- | -- | 0.131 | -- | 22.95 | 311 | -- | -- |
| 36.93 | 0.283 | 10.2 | -- | 0.301 | -0.834 | -- | -- | 0.0426 | 3.75 | 29.34 | 116 | -- | -- |
| 38.26 | 0.289 | 10.2 | 0.634 | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
| 48.66 | 0.326 | 10.2 | -- | 0.0608 | -- | -- | -- | 0.148 | 6.23 | -- | -- | -- | -- |
| 37.14 | 0.284 | 10.2 | -- | -- | -0.8 | -- | -- | 0.0203 | -- | 22.49 | 8004 | -- | -- |
| 48.86 | 0.326 | 10.2 | -- | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 30.86 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 14 | 31.11 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 19 | 31.19 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 30 | 31.34 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 38 | 31.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 47 | 31.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 64 | 31.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 69 | 31.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 75 | 31.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 88 | 31.63 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 113 | 31.75 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 22 |
| 131 | 31.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 141 | 31.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 167 | 31.89 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 198 | 31.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 201 | 31.96 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 205 | 31.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 206 | 31.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 239 | 32.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 240 | 32.02 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 23 |
| 262 | 32.06 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 20 |
| 267 | 32.06 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 300 | 32.11 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 22 |
| 306 | 32.12 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 307 | 32.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 311 | 32.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 327 | 32.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 376 | 32.22 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 17 |
| 417 | 32.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 456 | 32.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 467 | 32.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 469 | 32.36 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 473 | 32.37 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 474 | 32.37 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 512 | 32.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 553 | 32.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 556 | 32.45 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 21 |
| 572 | 32.46 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 597 | 32.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 616 | 32.49 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 617 | 32.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 679 | 32.52 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 720 | 32.54 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 11 |
| 768 | 32.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 775 | 32.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 786 | 32.57 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 795 | 32.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 918 | 32.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 969 | 32.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 999 | 32.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 11 |