Os02g0722600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0722600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 396.29 | 0.935 | 3.61 | -0.564 | 0.264 | 1.24 | 0.00382 | -0.853 | -0.875 | 23.8 | 25.2 | 1322 | -- | -- |
| 395.09 | 0.926 | 3.58 | -0.322 | 0.0785 | 1.26 | -0.138 | -- | -0.827 | 0.395 | 25.31 | 1098 | -- | -- |
| 396.29 | 0.927 | 3.61 | -0.564 | 0.264 | 1.24 | -- | -0.853 | -0.875 | 23.8 | 25.2 | 1322 | -- | -- |
| 395.14 | 0.926 | 3.58 | -0.288 | 0.0924 | 1.23 | -- | -- | -0.811 | 0.719 | 25.3 | 1098 | -- | -- |
| 395.71 | 0.926 | 3.6 | -0.519 | -- | 1.28 | -- | -0.744 | -0.887 | -- | 25.12 | 1091 | -- | -- |
| 436.49 | 0.979 | 3.49 | 0.057 | 0.422 | -- | -0.097 | -- | -0.388 | 0.926 | -- | -- | -- | -- |
| 436.53 | 0.978 | 3.49 | 0.0607 | 0.422 | -- | -- | -- | -0.387 | 0.872 | -- | -- | -- | -- |
| 395.57 | 0.926 | 3.58 | -0.309 | -- | 1.27 | -- | -- | -0.834 | -- | 25.33 | 1091 | -- | -- |
| 397.23 | 0.928 | 3.57 | -- | 0.112 | 1.15 | -- | -- | -0.761 | 1.84 | 25.31 | 1094 | -- | -- |
| 447.62 | 0.989 | 3.48 | 0.0763 | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
| 436.62 | 0.977 | 3.49 | -- | 0.423 | -- | -- | -- | -0.394 | 0.879 | -- | -- | -- | -- |
| 397.9 | 0.929 | 3.57 | -- | -- | 1.19 | -- | -- | -0.776 | -- | 25.3 | 1088 | -- | -- |
| 447.78 | 0.988 | 3.48 | -- | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 392.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 4 | 392.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 5 | 392.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 33 | 395.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 40 | 395.77 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 55 | 396.12 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 61 | 396.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 65 | 396.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 83 | 396.71 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 93 | 396.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 94 | 396.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 104 | 396.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 108 | 396.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 141 | 397.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 171 | 397.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 195 | 397.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 238 | 397.73 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 260 | 397.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 276 | 397.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 289 | 397.96 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 302 | 398.01 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 409 | 398.35 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 466 | 398.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 517 | 398.82 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 591 | 399.20 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 8 |
| 644 | 399.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 670 | 399.58 | temperature | 25 | 4320 | > th | dose dependent | sin | 19 | NA |
| 700 | 399.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 753 | 399.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 772 | 399.87 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 780 | 399.89 | temperature | 30 | 4320 | < th | dose dependent | sin | 18 | NA |
| 915 | 400.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 933 | 400.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 5 |
| 949 | 400.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 11 |
| 970 | 400.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 7 |
| 988 | 400.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 13 |