Os02g0722400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid transporter c (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0722400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Amino acid transporter c (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.45 | 0.52 | 10.1 | -1.29 | 1.24 | 1.95 | 0.344 | -4.48 | -0.102 | 8 | 23.45 | 1423 | -- | -- |
| 132.71 | 0.537 | 9.97 | 0.0475 | 1.21 | 1.61 | 0.334 | -- | 0.237 | 8.08 | 21.86 | 1395 | -- | -- |
| 122.49 | 0.515 | 10.1 | -1.22 | 1.24 | 1.93 | -- | -4.25 | -0.115 | 7.92 | 23.04 | 1422 | -- | -- |
| 132.91 | 0.537 | 9.97 | 0.0471 | 1.23 | 1.6 | -- | -- | 0.209 | 8.09 | 22.03 | 1383 | -- | -- |
| 205.58 | 0.668 | 10.1 | -1.19 | -- | 1.93 | -- | -4.09 | -0.11 | -- | 22.92 | 1407 | -- | -- |
| 224.82 | 0.703 | 9.88 | 0.609 | 1.25 | -- | 0.421 | -- | 0.576 | 7.58 | -- | -- | -- | -- |
| 225.31 | 0.703 | 9.88 | 0.619 | 1.25 | -- | -- | -- | 0.575 | 7.58 | -- | -- | -- | -- |
| 214.83 | 0.683 | 10 | -0.135 | -- | 1.55 | -- | -- | 0.121 | -- | 21.97 | 7198 | -- | -- |
| 132.97 | 0.537 | 9.97 | -- | 1.22 | 1.61 | -- | -- | 0.204 | 8.1 | 22.04 | 1384 | -- | -- |
| 309.31 | 0.822 | 9.91 | 0.637 | -- | -- | -- | -- | 0.594 | -- | -- | -- | -- | -- |
| 235.41 | 0.718 | 9.9 | -- | 1.26 | -- | -- | -- | 0.506 | 7.55 | -- | -- | -- | -- |
| 214.63 | 0.682 | 10 | -- | -- | 1.53 | -- | -- | 0.0933 | -- | 22.4 | 7193 | -- | -- |
| 320 | 0.835 | 9.93 | -- | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 2 | 119.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 45 | 121.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 276 | 125.52 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 286 | 125.70 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 288 | 125.79 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 295 | 125.88 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 310 | 126.10 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 316 | 126.14 | wind | 7 | 43200 | > th | dose independent | sin | 18 | NA |
| 340 | 126.41 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 365 | 126.61 | wind | 7 | 43200 | > th | dose dependent | sin | 17 | NA |
| 368 | 126.63 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 375 | 126.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 389 | 126.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 421 | 127.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 466 | 127.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 503 | 127.62 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 544 | 127.87 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 598 | 128.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 686 | 128.70 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 22 |
| 752 | 129.02 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 855 | 129.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 886 | 129.59 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 898 | 129.65 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 945 | 129.86 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 948 | 129.87 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 970 | 129.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 972 | 130.00 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 988 | 130.12 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |