FiT-DB / Search/ Help/ Sample detail

Os02g0720600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.69 (0.0646) R2 : 0.639
β1 : 1.22 (0.32) R2dD : 0.0453 R2D : -0.455
β2 : 0.704 (0.116) R2dC : 0.0329 R2C : -0.166
β3 : -8.01 (0.464) R2dE : 1.54 R2E : -0.695
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.4 (1.1) R2dD*E : 1.09 R2D*E : -0.497
γ1 : 0.714 (0.118) R2dN8 : 0.0601 R2N8 : -0.246
σ : 0.84
deviance : 325.57
__
_____
C
peak time of C : 4.53
E
wheather : radiation
threshold : 23.48
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 11.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.04 0.854 7.65 1.16 0.711 -7.54 -0.0501 -18.9 0.699 5.2 21.35 4320 18.2 11.2
392.27 0.922 6.83 0.619 0.933 -5.34 -0.508 -- 1.16 5.01 4.16 4324 18.2 11.3
325.57 0.84 7.69 1.22 0.704 -8.01 -- -20.4 0.714 4.53 23.48 4320 18.2 11.1
364.62 0.889 6.9 -0.883 0.868 -4.66 -- -- 0.87 4.48 3.251 4330 18.2 11.3
351.41 0.873 7.72 1.38 -- -8.06 -- -20.3 0.754 -- 13.95 4320 18.2 11.1
596.51 1.14 6.96 -2.88 0.879 -- 0.395 -- 0.459 6.63 -- -- -- --
596.89 1.14 6.96 -2.87 0.881 -- -- -- 0.458 6.56 -- -- -- --
393.43 0.924 6.89 -0.941 -- -4.48 -- -- 0.872 -- 3.319 4324 18.2 11.3
365.7 0.891 6.82 -- 0.828 -5.13 -- -- 1.12 3.98 4.014 4329 18.1 11.5
637.31 1.18 6.98 -2.85 -- -- -- -- 0.476 -- -- -- -- --
814.41 1.33 6.89 -- 0.845 -- -- -- 0.778 6.76 -- -- -- --
394.32 0.925 6.82 -- -- -5.04 -- -- 1.14 -- 3.891 4325 18.1 11.5
851.77 1.36 6.91 -- -- -- -- -- 0.792 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 351.49 radiation 1 14400 > th dose independent rect. 18 11
2 360.12 radiation 20 4320 < th dose dependent rect. 18 11
3 360.89 radiation 1 14400 > th dose independent rect. 18 1
13 361.38 radiation 1 14400 < th dose independent rect. 18 11
17 366.30 radiation 10 4320 < th dose independent rect. 17 1
19 367.62 radiation 10 4320 < th dose independent rect. 17 3
29 368.79 radiation 1 14400 > th dose dependent rect. 18 1
52 373.43 humidity 90 14400 > th dose dependent rect. 5 2
58 378.04 radiation 1 14400 > th dose independent rect. 18 14
60 379.39 radiation 10 4320 < th dose dependent rect. 18 2
66 381.87 radiation 10 43200 < th dose dependent rect. 18 2
86 382.80 radiation 10 43200 < th dose dependent rect. 18 7
170 387.78 radiation 10 14400 < th dose dependent rect. 24 5
181 388.87 radiation 1 14400 > th dose independent sin 11 NA
183 388.94 radiation 30 14400 > th dose independent rect. 7 1
201 389.00 radiation 1 14400 < th dose independent sin 11 NA
203 389.02 radiation 10 4320 > th dose dependent rect. 17 13
219 389.80 radiation 10 14400 < th dose dependent rect. 3 2
223 390.07 radiation 1 14400 < th dose dependent rect. 18 14
226 390.29 radiation 1 4320 < th dose dependent rect. 18 17
229 390.37 humidity 90 14400 > th dose dependent rect. 22 19
291 391.48 humidity 90 14400 < th dose independent rect. 21 4
296 391.66 humidity 90 14400 > th dose dependent rect. 11 20
322 392.40 radiation 1 14400 < th dose dependent rect. 3 5
323 392.42 humidity 90 14400 < th dose independent rect. 20 7
327 392.48 radiation 1 14400 > th dose independent rect. 5 3
328 392.49 radiation 1 14400 < th dose independent rect. 24 8
334 392.54 radiation 1 14400 < th dose independent rect. 3 5
385 393.12 radiation 1 14400 < th dose dependent rect. 18 22
388 393.19 humidity 90 14400 > th dose dependent sin 5 NA
429 393.46 radiation 1 14400 < th dose dependent sin 10 NA
451 393.65 humidity 90 14400 < th dose independent rect. 17 11
453 393.67 humidity 90 14400 > th dose dependent rect. 22 3
456 393.73 temperature 20 4320 > th dose dependent rect. 11 1
472 393.80 temperature 20 4320 > th dose dependent rect. 10 8
477 393.92 temperature 20 4320 > th dose dependent rect. 10 4
482 393.98 humidity 90 14400 < th dose independent rect. 17 14
485 393.99 radiation 1 14400 < th dose dependent rect. 16 16
495 394.10 radiation 1 14400 < th dose dependent rect. 16 19
515 394.28 humidity 90 14400 < th dose independent rect. 18 9
522 394.34 radiation 30 4320 < th dose independent rect. 16 16
588 394.92 humidity 90 14400 < th dose independent sin 12 NA
625 395.31 radiation 1 14400 > th dose independent rect. 4 8
643 395.40 radiation 1 14400 < th dose independent rect. 24 12
653 395.45 radiation 1 14400 < th dose independent rect. 3 9
672 395.54 radiation 1 14400 > th dose independent rect. 10 23
733 395.73 radiation 1 14400 > th dose independent no NA NA
735 395.73 radiation 1 14400 > th dose independent rect. 4 15
792 395.74 radiation 1 14400 < th dose independent rect. 10 23
809 395.81 radiation 1 14400 < th dose independent rect. 24 20
820 395.83 radiation 1 14400 < th dose independent rect. 3 17
838 395.85 radiation 1 14400 < th dose independent no NA NA
846 395.85 radiation 1 14400 < th dose independent rect. 3 23
906 396.01 humidity 90 14400 > th dose independent rect. 17 14
940 396.12 wind 1 43200 > th dose dependent rect. 6 9
947 396.14 humidity 90 14400 > th dose independent rect. 14 17
957 396.16 temperature 20 4320 > th dose dependent rect. 15 3