Os02g0720500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os02g0720500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.93 | 0.573 | 7.82 | -0.16 | 1.24 | -0.425 | -1.8 | -5.84 | 0.00966 | 4.03 | 19.45 | 109 | -- | -- |
| 170.04 | 0.607 | 7.69 | 0.766 | 1.17 | -0.686 | -0.246 | -- | 0.267 | 4.03 | 23.12 | 111 | -- | -- |
| 154.75 | 0.579 | 7.79 | 0.167 | 1.26 | -0.638 | -- | -4.93 | 0.0949 | 4.18 | 14.9 | 90 | -- | -- |
| 168.79 | 0.605 | 7.69 | 0.885 | 1.12 | -0.823 | -- | -- | 0.312 | 4.38 | 23.02 | 77 | -- | -- |
| 209.01 | 0.673 | 7.75 | 0.507 | -- | -1.51 | -- | -4.44 | 0.263 | -- | 23.97 | 112 | -- | -- |
| 179.85 | 0.629 | 7.72 | 0.733 | 1.48 | -- | 0.187 | -- | 0.195 | 4.15 | -- | -- | -- | -- |
| 179.95 | 0.628 | 7.72 | 0.731 | 1.48 | -- | -- | -- | 0.194 | 4.14 | -- | -- | -- | -- |
| 212.97 | 0.68 | 7.68 | 1.07 | -- | -1.78 | -- | -- | 0.418 | -- | 24.1 | 132 | -- | -- |
| 188.46 | 0.639 | 7.72 | -- | 1.26 | -0.563 | -- | -- | 0.181 | 4.26 | 23.52 | 70 | -- | -- |
| 298.16 | 0.807 | 7.72 | 0.791 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 194.04 | 0.652 | 7.74 | -- | 1.49 | -- | -- | -- | 0.112 | 4.13 | -- | -- | -- | -- |
| 242.69 | 0.726 | 7.71 | -- | -- | -1.62 | -- | -- | 0.279 | -- | 24.2 | 132 | -- | -- |
| 314.65 | 0.828 | 7.74 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.60 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 7 | 138.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 36 | 142.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 41 | 142.14 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 19 |
| 44 | 142.22 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 45 | 142.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 81 | 143.54 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 90 | 143.97 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 3 | 21 |
| 93 | 144.11 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 109 | 144.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 170 | 146.21 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 18 |
| 184 | 146.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 205 | 146.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 206 | 146.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 218 | 147.07 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 222 | 147.10 | wind | 3 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 226 | 147.12 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 253 | 147.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 264 | 147.52 | temperature | 30 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 265 | 147.53 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 267 | 147.56 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 271 | 147.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 273 | 147.64 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 275 | 147.65 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 279 | 147.71 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 290 | 147.83 | humidity | 90 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 292 | 147.84 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 294 | 147.85 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 302 | 147.92 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 341 | 148.17 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 365 | 148.30 | humidity | 60 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 389 | 148.37 | wind | 3 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 436 | 148.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 22 |
| 453 | 148.53 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 476 | 148.58 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 501 | 148.64 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 527 | 148.69 | humidity | 80 | 43200 | > th | dose independent | sin | 15 | NA |
| 534 | 148.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 16 |
| 545 | 148.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 562 | 148.73 | temperature | 25 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 585 | 148.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 617 | 148.80 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 12 |
| 620 | 148.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 636 | 148.84 | temperature | 10 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 655 | 148.86 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 657 | 148.86 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 665 | 148.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 14 |
| 669 | 148.88 | temperature | 25 | 43200 | < th | dose dependent | sin | 13 | NA |
| 678 | 148.89 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 716 | 148.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 731 | 148.93 | temperature | 10 | 43200 | > th | dose dependent | sin | 12 | NA |
| 833 | 149.01 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 23 |
| 846 | 149.02 | wind | 3 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 860 | 149.03 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 19 | 23 |
| 880 | 149.04 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 881 | 149.05 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 883 | 149.05 | atmosphere | 1000 | 10 | < th | dose independent | no | NA | NA |
| 900 | 149.06 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 23 | 23 |
| 926 | 149.08 | wind | 1 | 43200 | > th | dose independent | sin | 19 | NA |
| 931 | 149.08 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 23 |
| 985 | 149.12 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |