Os02g0720100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os02g0720100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.14 | 0.713 | 8.31 | -2.25 | 1.5 | -1.77 | 1.85 | -3.78 | -0.941 | 8.12 | 20.93 | 1407 | -- | -- |
| 258.54 | 0.749 | 8.2 | -1.42 | 1.45 | -1.39 | 1.97 | -- | -0.791 | 8.26 | 21 | 1695 | -- | -- |
| 240.39 | 0.722 | 8.31 | -2.2 | 1.5 | -1.78 | -- | -3.81 | -0.944 | 8.1 | 20.94 | 1377 | -- | -- |
| 267.48 | 0.762 | 8.19 | -1.29 | 1.49 | -1.52 | -- | -- | -0.758 | 8.24 | 20.58 | 1687 | -- | -- |
| 342.02 | 0.861 | 8.32 | -2.32 | -- | -1.66 | -- | -3.53 | -0.924 | -- | 21.1 | 701 | -- | -- |
| 306.34 | 0.821 | 8.27 | -2.01 | 1.51 | -- | 1.94 | -- | -1.11 | 8.23 | -- | -- | -- | -- |
| 317.87 | 0.835 | 8.27 | -1.96 | 1.5 | -- | -- | -- | -1.11 | 8.23 | -- | -- | -- | -- |
| 329.23 | 0.845 | 8.22 | -1.47 | -- | -1.39 | -- | -- | -0.55 | -- | 25.3 | 559 | -- | -- |
| 304.16 | 0.812 | 8.12 | -- | 1.43 | -2.05 | -- | -- | -0.453 | 8.23 | 20.5 | 1764 | -- | -- |
| 442.62 | 0.983 | 8.31 | -1.95 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 418.76 | 0.957 | 8.22 | -- | 1.49 | -- | -- | -- | -0.896 | 8.33 | -- | -- | -- | -- |
| 385.67 | 0.915 | 8.2 | -- | -- | -1.66 | -- | -- | -0.374 | -- | 24.8 | 579 | -- | -- |
| 542.47 | 1.09 | 8.26 | -- | -- | -- | -- | -- | -0.881 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 2 | 234.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 11 | 235.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 23 | 236.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 25 | 236.20 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 76 | 237.08 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 127 | 237.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 249 | 238.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 255 | 238.42 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 262 | 238.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 310 | 238.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 311 | 238.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 312 | 238.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 374 | 239.37 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 397 | 239.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 401 | 239.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 405 | 239.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 489 | 241.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 494 | 241.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 499 | 242.04 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 512 | 242.29 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 537 | 242.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 581 | 243.74 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 589 | 243.81 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 601 | 244.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 614 | 244.42 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 615 | 244.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 625 | 244.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 649 | 244.99 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 657 | 245.10 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 659 | 245.12 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 675 | 245.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 677 | 245.33 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 680 | 245.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 693 | 245.47 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 696 | 245.50 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 703 | 245.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 720 | 245.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 725 | 245.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 737 | 245.92 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 742 | 245.97 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 776 | 246.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 780 | 246.31 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 823 | 246.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 865 | 246.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 894 | 247.05 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 912 | 247.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 938 | 247.30 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 952 | 247.37 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 980 | 247.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |