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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0719600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7 (0.189) R2 : 0.534
β1 : 1.74 (0.679) R2dD : 0.0145 R2D : -0.194
β2 : 3.12 (0.281) R2dC : 0.117 R2C : 0.0519
β3 : -18.1 (1.48) R2dE : 1.13 R2E : -0.357
β4 : -7.05 (1.1) R2dD*C : 0.0471 R2D*C : -0.0112
β5 : -63.8 (7.07) R2dD*E : 0.649 R2D*E : -0.599
γ1 : 1.84 (0.274) R2dN8 : 0.0705 R2N8 : -0.0998
σ : 2.2
deviance : 2189.52
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_____
C
peak time of C : 13.5
E
wheather : radiation
threshold : 0.9499
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4
open length of G : 1.01

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2189.52 2.2 7 1.74 3.12 -18.1 -7.05 -63.8 1.84 13.5 0.9499 4320 4 1.01
3031.15 2.58 5.9 -4.93 3 0.205 -6.92 -- 1.16 13.4 1.096 4338 4.03 1.13
2389.36 2.28 7 1.48 3.12 -18 -- -63.6 1.82 13.5 0.95 4319 4 1
3213.11 2.64 5.94 -5.09 2.94 0.269 -- -- 1.03 13.3 23.22 5758 3.95 1.1
2971.98 2.54 7.11 1.15 -- -17.8 -- -62.3 1.64 -- 1.079 4320 4 1
3031.81 2.58 5.9 -4.93 2.98 -- -6.92 -- 1.16 13.4 -- -- -- --
3225.69 2.66 5.92 -5.16 2.98 -- -- -- 1.12 13.3 -- -- -- --
3437.86 2.73 6.15 -4.98 -- 1.62 -- -- 0.396 -- 8.637 13845 4.03 0.7
2627.08 2.39 5.05 -- 3.76 -5.27 -- -- 3.16 12.8 1.662 47520 4.6 0.283
3772.82 2.87 5.96 -5.28 -- -- -- -- 1.06 -- -- -- -- --
3928.24 2.93 5.79 -- 3.07 -- -- -- 1.7 13.3 -- -- -- --
2944.19 2.53 5.66 -- -- -6.55 -- -- 2.37 -- 1.367 47520 4.52 0.367
4507.83 3.13 5.83 -- -- -- -- -- 1.65 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2189.71 radiation 1 43200 < th dose independent rect. 18 11
2 2190.41 radiation 1 43200 < th dose dependent rect. 4 1
7 2196.63 radiation 1 43200 < th dose independent rect. 18 3
8 2196.72 radiation 1 43200 < th dose independent rect. 18 6
17 2198.02 radiation 1 43200 < th dose dependent rect. 22 7
18 2198.18 radiation 1 43200 < th dose dependent rect. 19 10
22 2202.04 radiation 1 4320 < th dose dependent rect. 4 1
24 2218.28 radiation 1 43200 > th dose independent rect. 18 11
25 2220.47 radiation 1 43200 > th dose independent rect. 18 1
36 2230.81 wind 5 43200 < th dose independent rect. 15 2
38 2236.82 wind 5 43200 > th dose independent rect. 15 2
41 2241.15 wind 5 43200 < th dose independent rect. 14 6
42 2242.58 humidity 90 43200 < th dose independent rect. 19 1
43 2244.86 wind 5 43200 > th dose independent rect. 14 6
45 2245.07 radiation 20 43200 > th dose independent rect. 9 1
48 2246.34 wind 3 43200 > th dose dependent rect. 15 2
62 2255.76 radiation 1 43200 > th dose independent rect. 6 3
63 2255.97 radiation 1 43200 < th dose independent rect. 6 3
65 2257.42 wind 9 43200 < th dose independent rect. 21 2
70 2258.95 wind 9 43200 > th dose independent rect. 21 2
76 2260.35 radiation 1 4320 < th dose dependent rect. 18 12
84 2262.01 humidity 70 43200 > th dose independent rect. 4 7
89 2262.88 wind 3 43200 > th dose dependent rect. 14 6
99 2265.87 humidity 70 43200 > th dose independent rect. 7 4
102 2266.98 humidity 50 43200 < th dose independent rect. 16 1
107 2267.54 humidity 80 43200 < th dose dependent rect. 10 1
119 2267.79 radiation 1 43200 < th dose dependent rect. 19 16
121 2267.83 radiation 1 43200 < th dose dependent rect. 5 6
122 2267.83 radiation 1 43200 < th dose dependent rect. 22 13
134 2268.15 wind 9 43200 < th dose dependent rect. 14 1
147 2269.12 radiation 20 43200 > th dose independent rect. 8 3
158 2269.51 humidity 70 43200 < th dose independent rect. 3 8
192 2271.06 wind 9 43200 < th dose dependent rect. 13 4
206 2272.24 humidity 70 43200 < th dose dependent rect. 10 3
207 2272.36 radiation 1 43200 < th dose dependent sin 6 NA
229 2273.23 humidity 70 43200 < th dose independent rect. 10 1
235 2273.44 radiation 1 4320 < th dose dependent rect. 22 8
237 2273.50 humidity 80 43200 < th dose dependent rect. 19 1
242 2273.77 radiation 1 43200 < th dose dependent rect. 6 1
272 2275.10 humidity 50 43200 > th dose independent rect. 16 1
285 2275.80 radiation 40 43200 < th dose dependent rect. 9 2
286 2275.98 radiation 30 43200 < th dose independent rect. 9 1
309 2277.39 humidity 70 43200 < th dose independent rect. 7 4
321 2278.28 humidity 50 43200 > th dose independent rect. 15 12
325 2278.44 humidity 50 43200 > th dose independent rect. 15 10
326 2278.45 humidity 50 43200 > th dose independent rect. 15 7
350 2279.20 humidity 50 43200 > th dose independent rect. 16 3
358 2279.99 radiation 10 43200 > th dose dependent rect. 9 1
361 2280.10 wind 7 43200 < th dose dependent rect. 11 10
370 2280.75 wind 9 43200 > th dose dependent rect. 21 1
376 2281.33 humidity 80 43200 < th dose independent rect. 19 5
386 2281.81 humidity 70 43200 < th dose independent rect. 20 15
392 2282.42 humidity 70 43200 > th dose independent rect. 19 16
394 2282.49 atmosphere 1005 43200 > th dose independent rect. 10 4
398 2282.68 atmosphere 1005 43200 > th dose independent rect. 12 2
400 2282.78 atmosphere 1005 43200 < th dose independent rect. 10 4
415 2283.34 radiation 1 43200 < th dose independent rect. 18 17
435 2283.87 humidity 80 43200 < th dose dependent rect. 19 17
452 2284.49 atmosphere 1005 43200 > th dose independent rect. 8 9
456 2284.64 humidity 80 43200 > th dose independent rect. 19 5
457 2284.64 humidity 60 43200 > th dose independent rect. 19 19
471 2284.90 atmosphere 1005 43200 < th dose independent rect. 8 9
477 2285.00 radiation 20 43200 < th dose dependent rect. 8 1
495 2285.19 radiation 1 4320 < th dose dependent sin 11 NA
512 2285.61 humidity 80 43200 > th dose independent rect. 20 3
516 2285.68 radiation 1 43200 < th dose independent rect. 1 11
524 2285.76 atmosphere 995 43200 > th dose dependent rect. 9 1
527 2285.78 radiation 1 43200 < th dose independent rect. 22 14
539 2285.85 atmosphere 1005 43200 < th dose independent rect. 12 2
547 2285.96 temperature 20 43200 > th dose independent rect. 6 2
609 2286.89 atmosphere 1015 43200 < th dose dependent rect. 9 2
625 2287.04 temperature 20 43200 < th dose independent rect. 6 2
692 2288.39 humidity 70 43200 > th dose independent rect. 19 1
720 2288.82 wind 1 43200 > th dose independent rect. 19 1
746 2289.19 atmosphere 1015 43200 < th dose dependent rect. 6 5
758 2289.33 humidity 80 43200 < th dose dependent rect. 2 10
781 2289.79 atmosphere 1005 43200 < th dose independent sin 0 NA
802 2290.04 atmosphere 1005 43200 > th dose independent sin 0 NA
806 2290.09 radiation 1 43200 < th dose dependent rect. 6 23
818 2290.23 atmosphere 1015 43200 < th dose dependent rect. 6 1
822 2290.30 radiation 1 43200 < th dose independent sin 4 NA
866 2290.62 radiation 1 43200 < th dose dependent rect. 6 15
908 2290.97 radiation 1 43200 > th dose independent sin 4 NA
919 2291.06 radiation 1 43200 < th dose dependent rect. 18 3
920 2291.06 radiation 1 43200 < th dose dependent rect. 18 6
923 2291.09 atmosphere 995 43200 > th dose dependent rect. 6 1
992 2291.68 atmosphere 1005 43200 > th dose independent rect. 16 1