Os02g0718600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0718600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.79 | 0.773 | 12 | -0.632 | 1.8 | -1.1 | 0.458 | 0.659 | 0.18 | 10.9 | 20 | 2624 | -- | -- |
| 271.62 | 0.768 | 12 | -0.734 | 1.79 | -1.23 | 0.47 | -- | 0.171 | 10.9 | 20 | 2624 | -- | -- |
| 271.64 | 0.768 | 12 | -0.623 | 1.8 | -1.09 | -- | 0.633 | 0.176 | 11 | 19.91 | 2650 | -- | -- |
| 272.26 | 0.768 | 12 | -0.72 | 1.8 | -1.21 | -- | -- | 0.16 | 11 | 19.96 | 2653 | -- | -- |
| 455.38 | 0.994 | 12.1 | -1.07 | -- | -0.994 | -- | 0.0434 | 0.0477 | -- | 21.3 | 901 | -- | -- |
| 301.19 | 0.814 | 12.1 | -1.39 | 1.85 | -- | 0.349 | -- | -0.145 | 11 | -- | -- | -- | -- |
| 301.69 | 0.813 | 12.1 | -1.37 | 1.85 | -- | -- | -- | -0.143 | 11.1 | -- | -- | -- | -- |
| 450.32 | 0.988 | 12 | -0.917 | -- | -1.36 | -- | -- | 0.2 | -- | 21.31 | 885 | -- | -- |
| 282.42 | 0.783 | 12 | -- | 1.84 | -1.43 | -- | -- | 0.322 | 11 | 20 | 5565 | -- | -- |
| 514.26 | 1.06 | 12.1 | -1.41 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 351.23 | 0.877 | 12 | -- | 1.86 | -- | -- | -- | 0.00948 | 11.1 | -- | -- | -- | -- |
| 470.54 | 1.01 | 12.1 | -- | -- | -1.53 | -- | -- | 0.238 | -- | 21.1 | 905 | -- | -- |
| 566.98 | 1.11 | 12.1 | -- | -- | -- | -- | -- | -0.00119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.51 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 2 | 253.64 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 6 | 254.07 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 7 | 254.10 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 24 | 255.21 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 34 | 255.55 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 50 | 255.88 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 69 | 256.24 | wind | 3 | 14400 | < th | dose independent | sin | 9 | NA |
| 80 | 256.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 90 | 256.46 | wind | 3 | 14400 | > th | dose independent | sin | 9 | NA |
| 95 | 256.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 172 | 257.38 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 208 | 257.74 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 258 | 258.12 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 263 | 258.14 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 7 |
| 265 | 258.15 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 16 | NA |
| 293 | 258.38 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 12 |
| 298 | 258.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 16 |
| 303 | 258.43 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 377 | 258.84 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 405 | 258.97 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 19 |
| 410 | 258.99 | wind | 5 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 421 | 259.04 | wind | 5 | 14400 | < th | dose dependent | sin | 9 | NA |
| 468 | 259.30 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 486 | 259.41 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 487 | 259.43 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 684 | 260.41 | wind | 1 | 14400 | > th | dose dependent | sin | 8 | NA |
| 716 | 260.57 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 719 | 260.58 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 741 | 260.66 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 747 | 260.70 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 886 | 261.34 | wind | 1 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 895 | 261.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 16 |
| 909 | 261.43 | wind | 7 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 940 | 261.61 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 960 | 261.69 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 13 |