Os02g0716600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0716600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.27 | 0.772 | 9.91 | -1.64 | 2.04 | -2.43 | 1.16 | 0.835 | -1.85 | 7.56 | 15.45 | 66 | 7.12 | 20.3 |
| 271.06 | 0.767 | 9.93 | -1.71 | 2.03 | -2.44 | 1.07 | -- | -1.87 | 7.59 | 15.45 | 63 | 7.12 | 20.3 |
| 273.9 | 0.771 | 9.91 | -1.62 | 2.04 | -2.44 | -- | 0.65 | -1.85 | 7.56 | 15.73 | 65 | 7.08 | 20.3 |
| 274.23 | 0.771 | 9.92 | -1.69 | 2.04 | -2.43 | -- | -- | -1.87 | 7.56 | 15.54 | 64 | 7.12 | 20.3 |
| 359.35 | 0.883 | 10 | -1.5 | -- | -3.39 | -- | -0.0686 | -1.93 | -- | 11.13 | 81 | 9.43 | 17.5 |
| 360.35 | 0.89 | 9.96 | -2.15 | 3.09 | -- | 1.37 | -- | -2.09 | 6.28 | -- | -- | -- | -- |
| 365 | 0.895 | 9.96 | -2.13 | 3.1 | -- | -- | -- | -2.1 | 6.26 | -- | -- | -- | -- |
| 291.13 | 0.795 | 9.98 | -1.74 | -- | -4 | -- | -- | -1.94 | -- | 7.693 | 376 | 7.57 | 15.8 |
| 344.42 | 0.864 | 9.87 | -- | 1.9 | -2.93 | -- | -- | -1.61 | 8.06 | 16.75 | 79 | 6.95 | 20.3 |
| 862.13 | 1.37 | 10 | -2.05 | -- | -- | -- | -- | -2.03 | -- | -- | -- | -- | -- |
| 485 | 1.03 | 9.91 | -- | 3.07 | -- | -- | -- | -1.86 | 6.29 | -- | -- | -- | -- |
| 356.54 | 0.879 | 9.98 | -- | -- | -4.25 | -- | -- | -1.74 | -- | 9.483 | 385 | 6.73 | 17.5 |
| 972.96 | 1.46 | 9.97 | -- | -- | -- | -- | -- | -1.8 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.55 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 33 | 284.78 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 21 |
| 36 | 285.24 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 60 | 288.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 70 | 289.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 71 | 289.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 78 | 290.29 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 89 | 291.01 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 96 | 291.67 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 101 | 292.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 115 | 292.89 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 136 | 293.84 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 146 | 294.12 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 172 | 295.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 190 | 295.72 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 204 | 296.09 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 216 | 296.61 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 245 | 297.55 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 257 | 298.04 | temperature | 25.0 | 10 | < th | dose dependent | sin | 17 | NA |
| 270 | 298.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 278 | 298.72 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 294 | 299.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 299 | 299.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 318 | 299.62 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 362 | 300.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 363 | 300.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 416 | 301.44 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 417 | 301.45 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 489 | 302.54 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 507 | 302.83 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 516 | 303.04 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 580 | 303.64 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 605 | 303.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 623 | 304.20 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 789 | 306.29 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 22 |
| 808 | 306.53 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 22 |
| 849 | 306.95 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 856 | 306.99 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 22 |
| 894 | 307.43 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 950 | 308.15 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 976 | 308.41 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 8 |