Os02g0716100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0716100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.89 | 0.378 | 8.1 | -0.572 | 0.481 | -1.4 | -0.448 | -1.31 | -0.14 | 12.7 | 26.5 | 4354 | -- | -- |
| 65.9 | 0.378 | 8.14 | -0.758 | 0.49 | -1.21 | -0.47 | -- | -0.139 | 12.6 | 33.68 | 4365 | -- | -- |
| 65.73 | 0.378 | 8.11 | -0.58 | 0.487 | -1.39 | -- | -1.33 | -0.141 | 12.9 | 26.54 | 4309 | -- | -- |
| 66.68 | 0.38 | 8.14 | -0.789 | 0.483 | -1.21 | -- | -- | -0.135 | 12.7 | 33 | 4337 | -- | -- |
| 74.35 | 0.404 | 8.14 | -0.478 | -- | -1.24 | -- | -0.307 | -0.136 | -- | 28.6 | 4547 | -- | -- |
| 92.72 | 0.451 | 8.08 | -0.216 | 0.436 | -- | -0.476 | -- | 0.106 | 12.5 | -- | -- | -- | -- |
| 93.68 | 0.453 | 8.08 | -0.234 | 0.438 | -- | -- | -- | 0.104 | 12.6 | -- | -- | -- | -- |
| 72.94 | 0.4 | 8.14 | -0.528 | -- | -1.3 | -- | -- | -0.126 | -- | 30.9 | 4559 | -- | -- |
| 77.93 | 0.413 | 8.11 | -- | 0.191 | -1.18 | -- | -- | -0.0244 | 9.12 | 33 | 4337 | -- | -- |
| 105.71 | 0.48 | 8.09 | -0.25 | -- | -- | -- | -- | 0.096 | -- | -- | -- | -- | -- |
| 95.13 | 0.456 | 8.08 | -- | 0.442 | -- | -- | -- | 0.13 | 12.6 | -- | -- | -- | -- |
| 79.87 | 0.418 | 8.12 | -- | -- | -1.16 | -- | -- | -0.0456 | -- | 30.9 | 4559 | -- | -- |
| 107.35 | 0.484 | 8.08 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 63.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 9 | 63.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 8 |
| 15 | 63.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 21 | 63.58 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 10 |
| 26 | 63.61 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 31 | 63.62 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 70 | 63.70 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 94 | 63.74 | temperature | 15 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 118 | 63.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 125 | 63.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 199 | 63.91 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 222 | 63.94 | temperature | 15 | 4320 | > th | dose dependent | sin | 9 | NA |
| 873 | 64.99 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 976 | 65.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 980 | 65.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |