Os02g0715000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0715000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cysteine proteinase.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.35	(0.0531)	R²	:	0.416
β₁	:	3.56	(0.299)	R²_dD	:	2.72	R²_D	:	-4.21
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-133	(10.9)	R²_dE	:	273	R²_E	:	-290
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	811	(64.7)	R²_dD*E	:	290	R²_D*E	:	-273
γ₁	:	0.0985	(0.046)	R²_dN8	:	0.00831	R²_N8	:	-1.34
σ	:	0.403
deviance	:	74.78
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	1000
memory length	:	91
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	6.01
open length of G	:	1.05

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
73.45	0.403	2.35	3.58	0.155	-133	-0.124	811	0.0969	7.68	1000	91	6.01	1.02
124.93	0.525	2.96	-0.0134	0.219	0.0192	0.0955	--	0.0802	7.87	996.2	73	18	4.79
73.49	0.399	2.35	3.57	0.154	-133	--	811	0.098	7.87	1000	92	6.01	1.03
116.82	0.507	2.96	-0.0517	0.204	1.1	--	--	0.0976	8.29	996.5	585	18.6	17
74.78	0.403	2.35	3.56	--	-133	--	811	0.0985	--	1000	91	6.01	1.05
124.93	0.524	2.96	-0.0133	0.219	--	0.0949	--	0.0802	7.87	--	--	--	--
124.95	0.523	2.96	-0.0109	0.219	--	--	--	0.08	7.81	--	--	--	--
108.71	0.486	2.96	-0.0353	--	2.47	--	--	0.12	--	996.6	586	20.9	17.3
107.38	0.483	2.96	--	0.151	2.41	--	--	0.129	9.22	996.5	580	20.8	17.3
127.56	0.528	2.96	-0.00828	--	--	--	--	0.083	--	--	--	--	--
124.96	0.523	2.96	--	0.219	--	--	--	0.0812	7.82	--	--	--	--
105.3	0.478	2.96	--	--	2.89	--	--	0.11	--	995.7	433	21.5	15.8
127.56	0.527	2.96	--	--	--	--	--	0.084	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	73.45	atmosphere	1000	90	< th	dose independent	rect.	6	1
4	73.45	atmosphere	1000	90	< th	dose dependent	rect.	6	1
44	94.60	temperature	25	270	> th	dose dependent	rect.	4	1
45	95.50	temperature	25	270	> th	dose independent	rect.	4	1
49	97.78	atmosphere	1000	10	< th	dose independent	rect.	4	5
51	97.81	atmosphere	1000	270	< th	dose independent	rect.	4	1
52	97.81	atmosphere	1000	270	< th	dose dependent	rect.	4	1
57	98.11	atmosphere	1000	10	< th	dose dependent	rect.	4	5
84	100.69	temperature	25	270	> th	dose independent	rect.	3	4
89	101.76	temperature	25	90	> th	dose dependent	rect.	6	1
93	102.21	radiation	30	90	> th	dose independent	rect.	7	1
117	103.24	radiation	30	90	> th	dose dependent	rect.	7	1
133	103.44	temperature	25	30	> th	dose independent	rect.	7	1
147	105.52	radiation	10	30	> th	dose independent	rect.	7	1
149	105.58	atmosphere	1000	30	< th	dose independent	rect.	2	7
241	109.21	temperature	20	10	> th	dose dependent	rect.	7	1
250	109.50	temperature	25	720	> th	dose dependent	rect.	1	6
266	110.08	atmosphere	1000	720	< th	dose dependent	rect.	20	12
298	110.59	temperature	25	10	> th	dose dependent	rect.	6	3
302	110.66	temperature	25	10	> th	dose dependent	rect.	2	7
512	112.87	atmosphere	995	1440	> th	dose independent	rect.	12	21
527	113.00	atmosphere	995	1440	> th	dose independent	rect.	8	23
547	113.12	atmosphere	995	1440	> th	dose independent	rect.	2	23
560	113.22	atmosphere	995	1440	> th	dose independent	rect.	8	17
561	113.23	atmosphere	1000	720	< th	dose dependent	sin	9	NA
565	113.24	atmosphere	995	1440	> th	dose independent	rect.	20	23
568	113.25	atmosphere	995	1440	> th	dose independent	sin	14	NA
569	113.25	atmosphere	995	1440	> th	dose independent	sin	3	NA
570	113.25	atmosphere	995	1440	> th	dose independent	rect.	16	23
587	113.34	atmosphere	995	1440	> th	dose independent	rect.	14	23
593	113.37	atmosphere	1000	270	< th	dose dependent	sin	6	NA
597	113.41	atmosphere	995	1440	> th	dose independent	no	NA	NA
598	113.41	atmosphere	995	1440	< th	dose independent	sin	7	NA
599	113.41	atmosphere	995	1440	< th	dose independent	sin	16	NA
614	113.41	atmosphere	995	1440	< th	dose independent	no	NA	NA
615	113.41	atmosphere	995	1440	< th	dose independent	rect.	14	1
911	113.41	atmosphere	995	1440	< th	dose dependent	sin	7	NA
912	113.41	atmosphere	995	1440	< th	dose dependent	sin	13	NA
930	113.41	atmosphere	995	1440	< th	dose dependent	no	NA	NA
931	113.41	atmosphere	995	1440	< th	dose dependent	rect.	14	1