Os02g0714600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4).
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Os02g0714600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.62 | 0.344 | 11.5 | 0.0838 | 1.84 | 0.906 | 0.576 | 1.88 | -0.367 | 18.6 | 29.17 | 106 | -- | -- |
| 56.79 | 0.351 | 11.5 | 0.142 | 1.79 | 0.787 | 0.298 | -- | -0.36 | 18.6 | 25.06 | 162 | -- | -- |
| 54.25 | 0.343 | 11.5 | 0.0832 | 1.83 | 0.896 | -- | 1.76 | -0.367 | 18.6 | 27.98 | 127 | -- | -- |
| 56.59 | 0.35 | 11.5 | 0.11 | 1.75 | 0.687 | -- | -- | -0.325 | 18.7 | 16.33 | 162 | -- | -- |
| 110.87 | 0.49 | 11.5 | -0.087 | -- | 1.92 | -- | 0.785 | -0.556 | -- | -1.267e-05 | 728 | -- | -- |
| 63.1 | 0.372 | 11.5 | 0.0741 | 1.87 | -- | 0.532 | -- | -0.331 | 18.1 | -- | -- | -- | -- |
| 63.79 | 0.374 | 11.5 | 0.0688 | 1.87 | -- | -- | -- | -0.329 | 18.1 | -- | -- | -- | -- |
| 110.08 | 0.489 | 11.5 | -0.0792 | -- | 1.94 | -- | -- | -0.557 | -- | -48.76 | 715 | -- | -- |
| 56.21 | 0.349 | 11.5 | -- | 1.77 | 0.703 | -- | -- | -0.367 | 18.8 | 7.807 | 166 | -- | -- |
| 246 | 0.733 | 11.5 | 0.0154 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 63.92 | 0.374 | 11.5 | -- | 1.87 | -- | -- | -- | -0.337 | 18.1 | -- | -- | -- | -- |
| 110.25 | 0.489 | 11.5 | -- | -- | 1.93 | -- | -- | -0.548 | -- | -14.18 | 715 | -- | -- |
| 246.01 | 0.732 | 11.5 | -- | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.51 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 2 | 47.63 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 5 | 47.79 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 7 | 48.05 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 12 | 48.59 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 17 | 48.90 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 15 |
| 18 | 48.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 21 | 49.05 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 32 | 49.40 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 44 | 49.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 47 | 49.54 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 56 | 49.72 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 72 | 49.96 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 78 | 50.07 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 82 | 50.11 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 90 | 50.20 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 97 | 50.27 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 98 | 50.28 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 100 | 50.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 101 | 50.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 112 | 50.37 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 120 | 50.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 3 |
| 134 | 50.53 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 166 | 50.67 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 167 | 50.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 184 | 50.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 19 |
| 185 | 50.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 195 | 50.77 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 197 | 50.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 199 | 50.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 200 | 50.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 202 | 50.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 203 | 50.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 204 | 50.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 209 | 50.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 211 | 50.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 212 | 50.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 214 | 50.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 215 | 50.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 219 | 50.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 245 | 50.91 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 254 | 50.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 7 |
| 255 | 50.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 258 | 50.96 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 22 | 12 |
| 262 | 50.97 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 264 | 50.97 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 22 | 9 |
| 265 | 50.97 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 22 | 18 |
| 269 | 50.98 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 272 | 50.99 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 290 | 51.07 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 295 | 51.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 301 | 51.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 308 | 51.13 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 326 | 51.19 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 328 | 51.19 | radiation | 1.0 | 90 | < th | dose independent | rect. | 22 | 9 |
| 330 | 51.19 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 374 | 51.31 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 377 | 51.32 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 382 | 51.34 | radiation | 1.0 | 90 | < th | dose independent | rect. | 22 | 12 |
| 423 | 51.43 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 424 | 51.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 17 |
| 427 | 51.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 17 |
| 432 | 51.44 | radiation | 1.0 | 90 | < th | dose independent | rect. | 22 | 17 |
| 442 | 51.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 7 |
| 444 | 51.47 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 7 |
| 445 | 51.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 7 |
| 446 | 51.47 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 447 | 51.47 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 448 | 51.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 17 |
| 459 | 51.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 460 | 51.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 461 | 51.49 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 494 | 51.53 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 500 | 51.53 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 527 | 51.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 569 | 51.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 571 | 51.69 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 17 |
| 591 | 51.71 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 17 |
| 593 | 51.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 629 | 51.78 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 648 | 51.82 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 661 | 51.85 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 664 | 51.85 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 709 | 51.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 716 | 51.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 751 | 51.97 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 760 | 51.99 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 768 | 52.00 | radiation | 30.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 781 | 52.02 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 785 | 52.03 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 808 | 52.05 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 865 | 52.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 906 | 52.22 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 911 | 52.22 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 20 |
| 943 | 52.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 948 | 52.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 958 | 52.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 15 |
| 961 | 52.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 964 | 52.30 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |