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Os02g0714200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.4 | 0.553 | 9.35 | -4.11 | 1.58 | 1.85 | 0.29 | 2.05 | -1.57 | 16.9 | 23.55 | 11793 | -- | -- |
| 137.58 | 0.546 | 9.45 | -4.59 | 1.49 | 1.9 | 0.484 | -- | -1.8 | 16.6 | 27.49 | 12261 | -- | -- |
| 138.26 | 0.548 | 9.37 | -4.23 | 1.55 | 1.85 | -- | 1.73 | -1.64 | 16.7 | 23.8 | 12170 | -- | -- |
| 137.46 | 0.546 | 9.45 | -4.66 | 1.52 | 1.88 | -- | -- | -1.82 | 16.6 | 27.45 | 12252 | -- | -- |
| 257.82 | 0.752 | 9.31 | -4.18 | -- | 2.34 | -- | 0.046 | -1.29 | -- | 23.8 | 12170 | -- | -- |
| 271.99 | 0.773 | 9.27 | -3.77 | 1.53 | -- | 0.184 | -- | -0.976 | 17 | -- | -- | -- | -- |
| 272.08 | 0.772 | 9.27 | -3.77 | 1.54 | -- | -- | -- | -0.975 | 17 | -- | -- | -- | -- |
| 257.82 | 0.751 | 9.31 | -4.18 | -- | 2.35 | -- | -- | -1.29 | -- | 23.8 | 12170 | -- | -- |
| 617.78 | 1.16 | 9.21 | -- | 1.47 | 0.862 | -- | -- | -0.762 | 16.6 | 31.77 | 7878 | -- | -- |
| 396.03 | 0.93 | 9.25 | -3.82 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 646.18 | 1.19 | 9.17 | -- | 1.6 | -- | -- | -- | -0.555 | 16.9 | -- | -- | -- | -- |
| 679.28 | 1.21 | 9.18 | -- | -- | 1.88 | -- | -- | -0.707 | -- | 24.69 | 264 | -- | -- |
| 781.62 | 1.3 | 9.15 | -- | -- | -- | -- | -- | -0.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.07 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 133.18 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 7 | 133.75 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 11 | 134.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 12 | 134.06 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 14 | 134.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 15 | 134.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 26 | 134.98 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 29 | 135.39 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 37 | 135.73 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 42 | 135.87 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 56 | 136.35 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 57 | 136.36 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 60 | 136.43 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 79 | 136.65 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 83 | 136.73 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 87 | 136.82 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 115 | 137.12 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 116 | 137.12 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 140 | 137.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 144 | 137.29 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 163 | 137.42 | temperature | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 173 | 137.50 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 178 | 137.69 | temperature | 30.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 202 | 137.90 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 206 | 137.92 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 215 | 138.05 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 247 | 138.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 260 | 138.38 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 262 | 138.40 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 273 | 138.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 369 | 139.36 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 374 | 139.39 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 387 | 139.49 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 431 | 139.96 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 467 | 140.19 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 489 | 140.34 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 520 | 140.49 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 552 | 140.60 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 14 |
| 581 | 140.61 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 616 | 140.62 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 651 | 140.63 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 654 | 140.64 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 674 | 140.76 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 675 | 140.76 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 780 | 140.79 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 845 | 140.92 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 941 | 141.12 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
