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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0712700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.0539) R2 : 0.399
β1 : 1.27 (0.196) R2dD : 0.0562 R2D : 0.0582
β2 : 4.61 (0.312) R2dC : 1.45 R2C : -0.418
β3 : 3 (0.283) R2dE : 0.743 R2E : -1.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0171 (0.114) R2dN8 : -9.14e-06 R2N8 : -0.00579
σ : 0.999
deviance : 459.79
__
_____
C
peak time of C : 17.8
E
wheather : humidity
threshold : 49.21
memory length : 290
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.1
open length of G : 10.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
448.73 0.995 4.17 1.32 4.75 3.1 3.85 1.88 0.0153 17.8 51.18 268 21.1 10.7
450.55 0.989 4.17 1.27 4.64 3.05 2.1 -- 0.0035 17.8 50.49 289 21.1 10.3
461 1 4.17 1.15 5.1 3.59 -- -0.87 -0.014 17.6 57.26 304 20.7 10.6
459.79 0.999 4.16 1.27 4.61 3 -- -- 0.0171 17.8 49.21 290 21.1 10.2
711.84 1.25 4.09 1.35 -- -0.0135 -- -1.06 -0.00233 -- 81.97 47520 21.8 12
500.93 1.05 4.12 1.4 1.95 -- 1.74 -- 0.0238 19.9 -- -- -- --
509.76 1.06 4.12 1.35 1.95 -- -- -- 0.0254 19.9 -- -- -- --
705.99 1.24 4.08 1.3 -- 0.812 -- -- 0.0261 -- 47.73 1388 22.6 11.1
500.34 1.04 4.2 -- 4.81 3.18 -- -- -0.159 17.8 47.6 293 21.2 10.2
716.26 1.25 4.07 1.33 -- -- -- -- -0.000503 -- -- -- -- --
557.7 1.1 4.16 -- 1.94 -- -- -- -0.125 20 -- -- -- --
648.55 1.19 4.09 -- -- 1.2 -- -- -0.0944 -- 34.29 47520 15.1 13
762.76 1.29 4.11 -- -- -- -- -- -0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 450.48 humidity 50.0 270 > th dose dependent rect. 21 11
4 452.54 wind 7.0 270 < th dose independent rect. 17 19
5 452.89 precipitation 0.1 270 < th dose independent rect. 17 19
6 452.89 precipitation 0.1 270 < th dose dependent rect. 17 19
9 454.68 wind 9.0 270 < th dose independent rect. 12 5
10 454.90 precipitation 0.1 270 < th dose independent rect. 16 21
11 454.90 precipitation 0.1 270 < th dose dependent rect. 16 21
12 455.00 temperature 10.0 270 > th dose independent rect. 12 5
14 455.00 atmosphere 1015.0 270 < th dose independent rect. 12 5
15 455.00 temperature 10.0 270 > th dose independent rect. 17 19
17 455.41 radiation 40.0 10 < th dose independent rect. 13 5
19 455.47 radiation 1.0 270 > th dose independent rect. 12 5
21 455.52 precipitation 0.1 270 < th dose independent rect. 12 5
22 455.52 precipitation 0.1 270 < th dose dependent rect. 12 5
23 455.57 humidity 90.0 270 < th dose independent rect. 12 5
25 455.76 wind 1.0 90 > th dose independent rect. 11 1
30 456.23 atmosphere 995.0 270 > th dose independent rect. 12 5
31 456.32 temperature 10.0 90 > th dose dependent rect. 11 1
32 456.42 precipitation 0.1 270 < th dose independent rect. 8 4
33 456.42 precipitation 0.1 270 < th dose dependent rect. 8 4
34 456.43 wind 1.0 270 > th dose independent rect. 8 4
36 456.49 temperature 10.0 270 > th dose independent rect. 8 4
37 456.49 atmosphere 995.0 270 > th dose independent rect. 8 4
38 456.49 atmosphere 1015.0 270 < th dose independent rect. 8 4
39 456.49 temperature 10.0 270 > th dose independent rect. 12 20
40 456.51 wind 9.0 270 < th dose independent rect. 8 4
46 456.81 wind 9.0 270 < th dose independent rect. 12 20
47 456.88 wind 1.0 270 > th dose independent rect. 12 5
52 456.99 radiation 30.0 270 < th dose independent rect. 22 10
56 457.04 wind 9.0 270 < th dose independent rect. 13 3
59 457.14 radiation 1.0 270 > th dose independent rect. 8 4
61 457.23 wind 9.0 90 < th dose independent rect. 11 1
67 457.30 atmosphere 995.0 270 > th dose independent rect. 17 19
74 457.35 humidity 70.0 270 > th dose independent rect. 22 10
75 457.35 temperature 10.0 90 > th dose independent rect. 19 18
76 457.35 atmosphere 995.0 90 > th dose independent rect. 19 18
79 457.37 temperature 10.0 270 > th dose independent rect. 13 3
81 457.37 atmosphere 1010.0 270 < th dose independent rect. 13 3
83 457.37 temperature 10.0 270 > th dose independent rect. 16 21
88 457.55 precipitation 0.1 270 < th dose independent rect. 13 3
93 457.55 precipitation 0.1 270 < th dose dependent rect. 13 3
94 457.56 humidity 90.0 10 < th dose independent rect. 11 3
95 457.56 radiation 1.0 270 > th dose independent rect. 13 3
98 457.62 radiation 40.0 10 < th dose independent rect. 13 19
99 457.63 atmosphere 995.0 270 > th dose independent rect. 12 20
104 457.87 temperature 10.0 90 > th dose independent rect. 11 1
105 457.87 atmosphere 995.0 90 > th dose independent rect. 11 1
106 457.87 atmosphere 1015.0 90 < th dose independent rect. 11 1
107 457.87 precipitation 0.1 90 < th dose independent rect. 11 1
108 457.87 temperature 10.0 90 > th dose independent rect. 12 23
109 457.87 precipitation 0.1 90 < th dose dependent rect. 11 1
111 457.90 temperature 10.0 10 > th dose dependent rect. 11 2
114 457.93 radiation 1.0 90 > th dose independent rect. 11 1
124 458.15 temperature 10.0 270 > th dose independent rect. 22 10
125 458.15 temperature 30.0 270 < th dose independent rect. 22 10
126 458.15 humidity 50.0 270 > th dose independent rect. 22 10
128 458.15 atmosphere 995.0 270 > th dose independent rect. 22 10
129 458.15 temperature 10.0 270 > th dose independent rect. 8 14
138 458.20 atmosphere 1000.0 30 > th dose independent rect. 13 22
140 458.29 wind 9.0 270 < th dose independent rect. 22 10
143 458.35 wind 7.0 270 < th dose independent rect. 17 10
147 458.44 wind 9.0 90 < th dose independent rect. 12 23
159 458.57 humidity 50.0 270 > th dose independent rect. 8 4
166 458.64 atmosphere 995.0 270 > th dose independent rect. 13 3
170 458.69 humidity 90.0 270 < th dose independent rect. 13 3
171 458.72 temperature 10.0 1440 > th dose independent rect. 12 2
175 458.72 atmosphere 995.0 1440 > th dose independent rect. 12 2
177 458.72 wind 9.0 270 < th dose independent rect. 8 14
179 458.72 temperature 10.0 1440 > th dose independent rect. 14 22
190 458.77 atmosphere 1015.0 270 < th dose independent rect. 17 19
192 458.79 wind 9.0 10 < th dose independent rect. 13 22
223 459.15 wind 1.0 270 > th dose independent rect. 13 3
226 459.16 temperature 10.0 90 > th dose dependent rect. 19 18
252 459.30 precipitation 0.1 270 < th dose independent rect. 8 14
253 459.30 precipitation 0.1 270 < th dose dependent rect. 8 14
254 459.31 humidity 90.0 90 < th dose independent rect. 11 1
265 459.57 radiation 1.0 270 > th dose independent rect. 12 19
288 459.78 temperature 10.0 270 > th dose dependent rect. 17 19
297 459.80 precipitation 0.1 270 < th dose independent rect. 12 20
298 459.80 precipitation 0.1 270 < th dose dependent rect. 12 20
301 459.83 temperature 10.0 270 > th dose dependent rect. 8 4
318 459.98 humidity 90.0 270 < th dose independent rect. 8 4
319 459.99 atmosphere 1015.0 270 < th dose independent rect. 8 14
332 460.25 humidity 50.0 270 > th dose independent rect. 17 19
354 460.50 radiation 40.0 90 < th dose independent rect. 19 18
367 460.77 humidity 50.0 270 > th dose independent rect. 12 5
375 461.02 radiation 40.0 30 < th dose independent rect. 8 5
403 461.33 wind 9.0 30 < th dose dependent rect. 11 2
409 461.45 radiation 40.0 10 < th dose dependent rect. 13 5
410 461.46 radiation 40.0 90 < th dose independent rect. 11 1
421 461.60 wind 1.0 270 > th dose independent rect. 17 19
425 461.66 wind 1.0 270 > th dose independent rect. 8 14
447 461.72 humidity 90.0 10 < th dose independent rect. 24 14
452 461.83 precipitation 0.1 30 < th dose independent rect. 13 22
453 461.83 precipitation 0.1 30 < th dose dependent rect. 13 22
456 461.89 humidity 50.0 270 > th dose independent rect. 12 20
460 461.91 radiation 1.0 270 > th dose independent rect. 17 20
470 462.01 humidity 90.0 10 < th dose independent rect. 8 6
488 462.24 atmosphere 1015.0 90 < th dose dependent rect. 11 2
491 462.26 precipitation 0.1 270 < th dose independent rect. 22 10
492 462.26 precipitation 0.1 270 < th dose dependent rect. 22 10
496 462.34 wind 1.0 10 > th dose independent rect. 8 6
521 462.66 wind 9.0 270 < th dose dependent rect. 12 5
539 462.83 humidity 90.0 10 < th dose independent rect. 2 12
544 462.92 wind 9.0 10 < th dose independent rect. 18 20
553 462.99 wind 9.0 10 < th dose independent rect. 14 4
557 463.04 humidity 90.0 90 < th dose independent rect. 24 13
558 463.07 humidity 90.0 270 < th dose independent rect. 6 6
565 463.15 temperature 15.0 270 > th dose independent rect. 3 14
569 463.17 temperature 15.0 10 > th dose independent rect. 18 20
574 463.23 humidity 50.0 90 > th dose independent rect. 11 1
576 463.26 temperature 10.0 10 > th dose independent rect. 14 4
578 463.26 atmosphere 1010.0 10 < th dose independent rect. 14 4
582 463.26 wind 9.0 270 < th dose dependent rect. 8 4
586 463.32 atmosphere 995.0 10 > th dose independent rect. 18 20
596 463.43 wind 9.0 270 < th dose independent rect. 3 14
601 463.49 precipitation 0.1 1440 < th dose independent rect. 12 1
602 463.49 precipitation 0.1 1440 < th dose dependent rect. 12 1
604 463.51 temperature 10.0 270 > th dose independent rect. 17 10
605 463.51 radiation 20.0 270 < th dose independent rect. 17 10
609 463.51 atmosphere 1015.0 270 < th dose independent rect. 3 14
613 463.56 humidity 90.0 720 > th dose independent rect. 20 4
615 463.57 precipitation 0.1 10 < th dose independent rect. 18 20
617 463.57 precipitation 0.1 10 < th dose dependent rect. 18 20
645 463.70 precipitation 0.1 10 < th dose independent rect. 14 4
646 463.70 precipitation 0.1 10 < th dose dependent rect. 14 4
665 463.76 radiation 1.0 270 > th dose independent rect. 4 8
706 463.97 atmosphere 995.0 90 > th dose dependent rect. 13 5
722 464.06 humidity 90.0 720 > th dose dependent rect. 21 3
738 464.12 radiation 40.0 270 < th dose dependent rect. 22 10
758 464.26 wind 1.0 10 > th dose independent rect. 14 4
779 464.40 wind 9.0 270 < th dose dependent rect. 13 2
785 464.45 radiation 40.0 270 < th dose independent rect. 13 3
831 464.61 atmosphere 1015.0 30 < th dose independent rect. 13 22
894 464.96 radiation 1.0 10 > th dose independent rect. 8 6
896 464.97 temperature 10.0 10 > th dose independent rect. 8 6
898 464.97 atmosphere 995.0 10 > th dose independent rect. 8 6
899 464.97 atmosphere 1015.0 10 < th dose independent rect. 8 6
900 464.97 precipitation 0.1 10 < th dose independent rect. 8 6
901 464.97 temperature 10.0 10 > th dose independent rect. 14 18
903 464.97 precipitation 0.1 10 < th dose dependent rect. 8 6
933 465.13 wind 9.0 10 < th dose independent rect. 14 18
984 465.35 humidity 90.0 10 < th dose independent rect. 5 9
988 465.37 atmosphere 1015.0 270 < th dose dependent rect. 8 4
990 465.38 temperature 30.0 270 < th dose independent rect. 8 4