Os02g0711100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0711100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.74 | 0.314 | 9.58 | 1.11 | 0.603 | 0.835 | 0.823 | 0.786 | 0.147 | 18 | 20.41 | 1060 | -- | -- |
| 46.22 | 0.317 | 9.59 | 1.04 | 0.623 | 0.681 | 0.774 | -- | 0.143 | 18 | 20.96 | 1111 | -- | -- |
| 46.39 | 0.317 | 9.58 | 1.1 | 0.603 | 0.848 | -- | 0.784 | 0.146 | 18 | 20.4 | 1060 | -- | -- |
| 47.68 | 0.322 | 9.6 | 0.976 | 0.596 | 0.701 | -- | -- | 0.107 | 18 | 20.9 | 987 | -- | -- |
| 61.78 | 0.366 | 9.57 | 1.12 | -- | 0.875 | -- | 0.842 | 0.141 | -- | 20.31 | 604 | -- | -- |
| 59.93 | 0.363 | 9.57 | 1.27 | 0.614 | -- | 0.928 | -- | 0.282 | 18.5 | -- | -- | -- | -- |
| 62.07 | 0.369 | 9.56 | 1.26 | 0.618 | -- | -- | -- | 0.284 | 18.6 | -- | -- | -- | -- |
| 63.12 | 0.37 | 9.59 | 0.98 | -- | 0.73 | -- | -- | 0.0953 | -- | 20.99 | 645 | -- | -- |
| 64.4 | 0.374 | 9.63 | -- | 0.575 | 1.07 | -- | -- | -0.0409 | 17.9 | 20.4 | 2529 | -- | -- |
| 81.96 | 0.423 | 9.55 | 1.24 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 103.76 | 0.476 | 9.6 | -- | 0.602 | -- | -- | -- | 0.144 | 18.7 | -- | -- | -- | -- |
| 79.43 | 0.415 | 9.64 | -- | -- | 1.1 | -- | -- | -0.0992 | -- | 17.8 | 46883 | -- | -- |
| 122.7 | 0.517 | 9.58 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.55 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 9 | 44.22 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 19 | 44.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 27 | 44.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 28 | 44.65 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 32 | 44.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 39 | 44.78 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 12 |
| 41 | 44.80 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 44 | 44.82 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 46 | 44.82 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 16 |
| 57 | 44.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 116 | 45.11 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 6 |
| 135 | 45.17 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 183 | 45.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 187 | 45.33 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 22 |
| 212 | 45.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 400 | 45.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 467 | 45.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 470 | 45.93 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 489 | 45.94 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 23 |
| 515 | 45.98 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 517 | 45.98 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 535 | 46.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 584 | 46.07 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 633 | 46.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 640 | 46.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 642 | 46.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 769 | 46.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 821 | 46.35 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 855 | 46.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |