Os02g0710500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor protein kinase.
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Os02g0710500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.73 | 0.685 | 7.38 | -0.735 | 0.47 | -1.75 | 3.53 | -2.03 | -0.125 | 18.6 | 16.3 | 916 | -- | -- |
| 215.39 | 0.684 | 7.33 | -0.33 | 0.525 | -1.72 | 3.33 | -- | -0.016 | 18.2 | 17.1 | 897 | -- | -- |
| 225.37 | 0.699 | 7.41 | -1.1 | 0.689 | -1.41 | -- | -3.21 | -0.226 | 14.3 | -0.7314 | 1403 | -- | -- |
| 233.5 | 0.712 | 7.29 | -0.305 | 0.536 | -1.48 | -- | -- | 0.0718 | 15.7 | 17.44 | 1006 | -- | -- |
| 245.74 | 0.73 | 7.39 | -0.958 | -- | -1.71 | -- | -2.81 | -0.169 | -- | -6.71 | 1176 | -- | -- |
| 269.53 | 0.77 | 7.38 | -0.879 | 0.746 | -- | 0.841 | -- | -0.306 | 15 | -- | -- | -- | -- |
| 270.4 | 0.77 | 7.37 | -0.861 | 0.751 | -- | -- | -- | -0.302 | 14.1 | -- | -- | -- | -- |
| 245.87 | 0.73 | 7.33 | -0.433 | -- | -1.37 | -- | -- | -0.0145 | -- | 21.86 | 1144 | -- | -- |
| 232.94 | 0.711 | 7.3 | -- | 0.627 | -1.2 | -- | -- | 0.0114 | 14.1 | 21.47 | 1387 | -- | -- |
| 304.14 | 0.815 | 7.38 | -0.892 | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
| 289.93 | 0.797 | 7.35 | -- | 0.767 | -- | -- | -- | -0.206 | 14.2 | -- | -- | -- | -- |
| 250.66 | 0.737 | 7.3 | -- | -- | -1.45 | -- | -- | 0.0392 | -- | 21.57 | 1154 | -- | -- |
| 325.14 | 0.842 | 7.36 | -- | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 34 | 206.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 59 | 208.62 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 74 | 209.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 75 | 209.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 88 | 209.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 122 | 210.10 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 168 | 210.80 | temperature | 15 | 720 | > th | dose dependent | sin | 17 | NA |
| 204 | 211.33 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 270 | 212.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 290 | 212.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 361 | 213.37 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 373 | 213.51 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 473 | 214.66 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 17 |
| 494 | 214.87 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 500 | 214.91 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 19 |
| 501 | 214.91 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 510 | 215.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 538 | 215.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 561 | 215.51 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 7 |
| 585 | 215.69 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 590 | 215.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 592 | 215.76 | temperature | 30 | 90 | < th | dose dependent | sin | 18 | NA |
| 599 | 215.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 602 | 215.84 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 612 | 215.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 3 |
| 641 | 216.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 648 | 216.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 651 | 216.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 658 | 216.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 17 |
| 664 | 216.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 693 | 216.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 707 | 216.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 729 | 216.61 | radiation | 1 | 43200 | < th | dose dependent | sin | 1 | NA |
| 744 | 216.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 762 | 216.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 763 | 216.76 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 768 | 216.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 769 | 216.79 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 20 |
| 785 | 216.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 808 | 216.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 811 | 216.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 814 | 216.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 828 | 216.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 893 | 217.12 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 19 |
| 900 | 217.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 905 | 217.17 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 949 | 217.26 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 997 | 217.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 18 |