Os02g0709900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os02g0709900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.37 | 0.212 | 12.8 | 1.2 | 0.269 | -0.191 | -0.299 | 2.23 | 0.291 | 5.99 | 19.5 | 1857 | -- | -- |
| 24.24 | 0.231 | 12.9 | 0.603 | 0.241 | -0.245 | -0.551 | -- | 0.135 | 7.1 | 16.29 | 19119 | -- | -- |
| 20.43 | 0.211 | 12.8 | 1.29 | 0.264 | -0.222 | -- | 2.46 | 0.312 | 5.56 | 20.3 | 1912 | -- | -- |
| 24.64 | 0.231 | 12.9 | 0.707 | 0.285 | -0.219 | -- | -- | 0.183 | 5.66 | 10.76 | 18346 | -- | -- |
| 23.78 | 0.227 | 12.8 | 1.38 | -- | -0.315 | -- | 2.74 | 0.353 | -- | 21.6 | 1908 | -- | -- |
| 24.96 | 0.234 | 12.9 | 0.547 | 0.283 | -- | -0.43 | -- | 0.0976 | 6.19 | -- | -- | -- | -- |
| 25.36 | 0.236 | 12.9 | 0.541 | 0.283 | -- | -- | -- | 0.0986 | 5.76 | -- | -- | -- | -- |
| 27.91 | 0.247 | 12.9 | 0.598 | -- | -0.255 | -- | -- | 0.145 | -- | 21.6 | 1908 | -- | -- |
| 28.41 | 0.248 | 12.9 | -- | 0.282 | 0.347 | -- | -- | -0.0654 | 5.83 | 7.621 | 47520 | -- | -- |
| 29.5 | 0.254 | 12.9 | 0.55 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 33.07 | 0.269 | 12.9 | -- | 0.291 | -- | -- | -- | 0.0383 | 5.67 | -- | -- | -- | -- |
| 31.18 | 0.26 | 12.9 | -- | -- | 0.342 | -- | -- | 0.0339 | -- | 34.6 | 47414 | -- | -- |
| 37.47 | 0.286 | 12.9 | -- | -- | -- | -- | -- | 0.0443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 19.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 10 | 19.88 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 21 | 19.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 8 |
| 33 | 19.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 44 | 20.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 45 | 20.01 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 67 | 20.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 85 | 20.11 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 88 | 20.11 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 120 | 20.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 154 | 20.22 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 16 |
| 166 | 20.24 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 13 |
| 170 | 20.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 175 | 20.26 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 183 | 20.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 261 | 20.37 | radiation | 1 | 4320 | < th | dose dependent | sin | 11 | NA |
| 279 | 20.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 285 | 20.39 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 290 | 20.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 309 | 20.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 340 | 20.42 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 474 | 20.49 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 511 | 20.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 515 | 20.51 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 519 | 20.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 541 | 20.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 570 | 20.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 598 | 20.54 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 603 | 20.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 731 | 20.59 | humidity | 90 | 14400 | > th | dose dependent | sin | 10 | NA |
| 781 | 20.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 881 | 20.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 935 | 20.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 990 | 20.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |