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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0709300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.047) R2 : 0.342
β1 : -3.07 (0.222) R2dD : 0.48 R2D : 0.121
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.25 (0.231) R2dE : 0.0426 R2E : 0.00622
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.79 (1.01) R2dD*E : 0.116 R2D*E : -0.214
γ1 : -0.769 (0.104) R2dN8 : 0.116 R2N8 : -0.0124
σ : 0.875
deviance : 353.29
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.19
memory length : 4654
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 12.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.13 0.877 3.63 -2.95 0.258 1.22 -0.902 -6.71 -0.73 9.52 1.16 4602 18 12.4
378.58 0.906 3.63 -2.2 0.245 1.02 -0.967 -- -0.686 9.48 1.19 4542 18.1 13.5
349.88 0.871 3.64 -3.02 0.257 1.16 -- -6.71 -0.75 8.14 1.16 4607 18 12.5
382.91 0.911 3.63 -2.2 0.229 1.08 -- -- -0.683 9.3 1.165 4542 18.1 14.4
353.29 0.875 3.64 -3.07 -- 1.25 -- -6.79 -0.769 -- 1.19 4654 18 12.6
390.86 0.927 3.63 -2.12 0.39 -- -1.3 -- -0.58 8.73 -- -- -- --
396.35 0.932 3.63 -2.16 0.399 -- -- -- -0.581 8.38 -- -- -- --
383.37 0.912 3.63 -2.21 -- 1.3 -- -- -0.679 -- 1.16 4542 18.1 15.1
506.73 1.05 3.63 -- 0.247 1.03 -- -- -0.616 8.93 1.49 4591 17.3 14.1
405.2 0.941 3.64 -2.16 -- -- -- -- -0.577 -- -- -- -- --
519.35 1.07 3.58 -- 0.391 -- -- -- -0.341 8.78 -- -- -- --
467.99 1.01 3.57 -- -- 1.7 -- -- -0.461 -- 8.5 8315 16.1 14
528.04 1.07 3.59 -- -- -- -- -- -0.338 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 357.51 temperature 20.0 30 > th dose dependent rect. 17 17
6 361.38 radiation 1.0 4320 > th dose independent rect. 18 12
8 361.41 temperature 20.0 270 > th dose independent rect. 5 3
9 361.54 wind 1.0 43200 < th dose independent rect. 2 1
18 362.84 radiation 1.0 4320 < th dose independent rect. 18 12
21 363.14 wind 1.0 14400 < th dose dependent rect. 2 2
22 363.15 temperature 20.0 270 > th dose independent rect. 6 1
24 363.38 wind 1.0 43200 > th dose independent rect. 2 1
29 363.59 temperature 15.0 270 > th dose dependent rect. 5 3
30 363.66 temperature 20.0 90 > th dose independent rect. 6 16
31 363.71 radiation 1.0 270 < th dose dependent sin 12 NA
32 363.93 temperature 25.0 90 > th dose independent rect. 17 17
35 364.21 temperature 25.0 90 > th dose independent rect. 15 19
40 364.73 radiation 30.0 90 < th dose independent rect. 17 17
41 365.04 temperature 20.0 30 > th dose dependent rect. 6 4
42 365.06 atmosphere 1000.0 90 > th dose independent rect. 17 17
43 365.08 humidity 90.0 14400 < th dose independent rect. 24 7
47 365.26 temperature 25.0 30 > th dose dependent sin 10 NA
62 366.07 temperature 15.0 270 > th dose dependent rect. 6 1
65 366.11 atmosphere 1005.0 90 > th dose independent rect. 10 7
73 366.42 atmosphere 995.0 90 > th dose dependent rect. 10 7
95 366.78 temperature 10.0 90 > th dose dependent rect. 6 16
102 366.93 temperature 10.0 10 > th dose dependent rect. 6 17
104 366.99 atmosphere 1000.0 270 > th dose independent rect. 8 21
116 367.21 temperature 10.0 270 > th dose dependent rect. 4 18
128 367.41 humidity 90.0 30 < th dose independent rect. 5 5
133 367.47 temperature 20.0 90 > th dose independent rect. 6 19
143 367.65 humidity 90.0 30 < th dose independent rect. 17 17
146 367.68 radiation 30.0 90 < th dose independent rect. 6 4
151 367.76 atmosphere 1000.0 270 > th dose independent rect. 4 15
153 367.79 temperature 25.0 30 > th dose dependent rect. 21 13
159 367.88 atmosphere 995.0 90 > th dose dependent rect. 17 17
164 367.98 humidity 90.0 14400 > th dose independent rect. 5 1
165 368.03 radiation 1.0 4320 > th dose independent rect. 18 1
178 368.09 radiation 1.0 4320 < th dose dependent rect. 2 3
199 368.30 humidity 90.0 14400 > th dose independent rect. 24 7
204 368.33 radiation 1.0 4320 < th dose dependent rect. 24 5
207 368.37 wind 9.0 1440 < th dose independent rect. 24 7
209 368.38 temperature 15.0 30 > th dose dependent rect. 6 19
217 368.42 radiation 1.0 270 > th dose independent sin 12 NA
218 368.44 humidity 90.0 14400 < th dose independent rect. 1 1
221 368.45 wind 1.0 10 > th dose dependent rect. 17 17
225 368.50 atmosphere 1005.0 270 > th dose independent rect. 4 3
227 368.51 atmosphere 1005.0 90 > th dose independent rect. 10 10
231 368.53 atmosphere 1000.0 270 > th dose independent rect. 15 18
234 368.54 radiation 1.0 270 > th dose independent rect. 17 15
236 368.55 radiation 1.0 270 < th dose dependent rect. 6 22
246 368.62 radiation 40.0 90 < th dose dependent rect. 17 17
249 368.66 atmosphere 1005.0 270 > th dose independent rect. 5 1
250 368.66 atmosphere 1005.0 270 > th dose independent rect. 8 9
254 368.74 radiation 40.0 90 < th dose dependent rect. 6 4
264 368.78 radiation 1.0 4320 < th dose dependent rect. 21 8
297 369.11 humidity 90.0 90 < th dose independent rect. 5 17
307 369.16 humidity 80.0 1440 < th dose independent rect. 17 15
317 369.28 radiation 1.0 270 < th dose independent sin 12 NA
319 369.28 humidity 80.0 14400 > th dose dependent rect. 22 8
331 369.34 humidity 50.0 4320 > th dose independent rect. 18 17
333 369.35 wind 9.0 270 < th dose independent rect. 7 23
338 369.40 humidity 80.0 1440 < th dose independent rect. 20 12
345 369.43 humidity 80.0 14400 > th dose dependent rect. 22 6
346 369.44 radiation 1.0 4320 < th dose independent rect. 5 1
347 369.44 wind 9.0 90 < th dose independent rect. 10 7
350 369.47 wind 9.0 270 < th dose independent rect. 8 21
358 369.54 radiation 1.0 4320 > th dose independent rect. 5 1
360 369.55 humidity 90.0 14400 > th dose independent rect. 1 1
370 369.63 atmosphere 1000.0 270 > th dose independent rect. 9 19
374 369.64 humidity 50.0 270 > th dose dependent rect. 19 9
380 369.66 humidity 80.0 14400 > th dose dependent rect. 24 2
381 369.66 humidity 80.0 14400 > th dose dependent rect. 23 4
391 369.73 humidity 90.0 14400 > th dose independent rect. 24 3
400 369.79 humidity 80.0 1440 < th dose independent rect. 17 11
407 369.84 wind 1.0 43200 < th dose dependent rect. 9 3
414 369.87 radiation 1.0 270 < th dose dependent rect. 15 13
415 369.88 temperature 10.0 270 > th dose dependent rect. 14 9
433 370.00 humidity 80.0 1440 < th dose independent sin 12 NA
436 370.00 precipitation 0.1 90 < th dose independent rect. 17 17
437 370.00 precipitation 0.1 90 < th dose dependent rect. 17 17
441 370.02 humidity 90.0 14400 < th dose independent rect. 5 1
452 370.09 radiation 30.0 90 < th dose dependent rect. 8 1
477 370.24 temperature 10.0 90 > th dose independent rect. 10 7
478 370.24 atmosphere 1015.0 90 < th dose independent rect. 10 7
479 370.24 temperature 10.0 90 > th dose independent rect. 17 17
487 370.28 humidity 50.0 90 > th dose independent rect. 17 17
489 370.29 humidity 60.0 10 > th dose independent rect. 17 17
493 370.32 precipitation 0.1 90 < th dose independent rect. 10 7
498 370.32 precipitation 0.1 90 < th dose dependent rect. 10 7
501 370.33 atmosphere 1000.0 10 > th dose independent rect. 10 20
523 370.46 temperature 20.0 90 > th dose dependent rect. 17 8
529 370.48 atmosphere 1015.0 90 < th dose dependent rect. 22 8
537 370.51 temperature 30.0 10 < th dose dependent rect. 10 20
539 370.52 atmosphere 1005.0 90 > th dose independent rect. 4 5
540 370.52 atmosphere 1005.0 10 > th dose independent rect. 5 5
550 370.57 humidity 80.0 1440 < th dose independent rect. 20 3
552 370.59 radiation 1.0 4320 < th dose independent rect. 24 6
559 370.61 radiation 1.0 4320 < th dose independent rect. 2 4
561 370.62 temperature 20.0 270 > th dose dependent rect. 15 7
563 370.64 humidity 80.0 1440 < th dose independent rect. 20 5
565 370.64 wind 1.0 90 > th dose independent rect. 10 7
577 370.69 radiation 1.0 4320 < th dose independent rect. 21 9
580 370.71 radiation 10.0 43200 > th dose independent rect. 17 1
614 370.80 atmosphere 995.0 90 > th dose independent rect. 10 7
622 370.82 humidity 80.0 1440 < th dose independent rect. 20 8
659 370.91 atmosphere 1010.0 10 < th dose independent rect. 6 4
669 370.93 humidity 50.0 14400 > th dose dependent rect. 24 3
692 371.00 radiation 20.0 90 < th dose independent rect. 8 1
695 371.02 humidity 50.0 30 > th dose independent rect. 10 7
698 371.03 atmosphere 1005.0 720 > th dose independent rect. 9 2
702 371.05 temperature 10.0 1440 > th dose independent rect. 11 7
707 371.05 temperature 10.0 1440 > th dose independent rect. 18 17
744 371.13 humidity 80.0 1440 > th dose independent rect. 20 3
746 371.13 atmosphere 995.0 1440 > th dose independent rect. 18 17
749 371.14 wind 9.0 90 < th dose independent rect. 10 20
771 371.22 humidity 80.0 1440 > th dose independent rect. 20 12
772 371.22 humidity 50.0 14400 > th dose dependent rect. 23 5
774 371.23 humidity 80.0 1440 > th dose independent rect. 17 15
778 371.24 radiation 1.0 90 > th dose independent rect. 4 6
790 371.24 atmosphere 995.0 270 > th dose dependent rect. 5 2
791 371.25 humidity 90.0 14400 > th dose independent rect. 3 4
798 371.27 radiation 10.0 30 < th dose independent rect. 6 17
801 371.28 humidity 90.0 30 < th dose independent rect. 5 15
809 371.30 radiation 40.0 10 < th dose independent rect. 6 4
829 371.39 wind 1.0 43200 < th dose independent rect. 8 5
850 371.44 radiation 1.0 4320 < th dose independent rect. 18 1
853 371.45 humidity 90.0 270 < th dose independent rect. 15 7
864 371.49 wind 9.0 90 < th dose independent rect. 17 17
865 371.49 temperature 25.0 270 < th dose independent rect. 8 20
878 371.51 atmosphere 995.0 10 > th dose dependent rect. 5 5
884 371.53 wind 1.0 10 > th dose independent rect. 6 4
895 371.55 radiation 1.0 4320 > th dose independent sin 11 NA
896 371.55 radiation 1.0 4320 < th dose independent rect. 18 4
902 371.56 radiation 1.0 4320 < th dose independent rect. 18 7
917 371.61 radiation 1.0 4320 > th dose independent rect. 18 16
922 371.62 wind 1.0 270 > th dose independent rect. 5 3
930 371.63 atmosphere 1000.0 270 > th dose independent rect. 23 14
935 371.64 atmosphere 995.0 270 > th dose dependent rect. 4 4
936 371.64 atmosphere 995.0 90 > th dose dependent rect. 4 6
965 371.73 atmosphere 1015.0 90 < th dose dependent rect. 6 16
969 371.74 wind 1.0 270 > th dose independent rect. 16 16
993 371.81 wind 9.0 4320 > th dose dependent rect. 12 1
999 371.83 humidity 80.0 1440 > th dose independent sin 12 NA