Os02g0709100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0709100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.33 | 0.368 | 6.66 | -0.442 | 0.15 | -0.634 | 0.853 | 0.525 | 0.00643 | 19.2 | 19.8 | 2474 | -- | -- |
| 61.54 | 0.365 | 6.64 | -0.368 | 0.151 | -0.771 | 0.88 | -- | 0.0307 | 19 | 19.42 | 2536 | -- | -- |
| 62.34 | 0.368 | 6.66 | -0.389 | 0.185 | -0.617 | -- | 0.733 | 0.0447 | 21 | 18.35 | 2671 | -- | -- |
| 62.07 | 0.367 | 6.64 | -0.434 | 0.214 | -0.936 | -- | -- | 0.0353 | 21 | 18.33 | 2764 | -- | -- |
| 64.22 | 0.373 | 6.66 | -0.391 | -- | -0.704 | -- | 0.543 | 0.0283 | -- | 18.3 | 2506 | -- | -- |
| 72.41 | 0.399 | 6.61 | 0.0179 | 0.151 | -- | 0.905 | -- | 0.199 | 19.1 | -- | -- | -- | -- |
| 73.43 | 0.401 | 6.61 | -0.00543 | 0.199 | -- | -- | -- | 0.198 | 22 | -- | -- | -- | -- |
| 64.19 | 0.373 | 6.64 | -0.409 | -- | -0.914 | -- | -- | 0.0381 | -- | 18.36 | 2541 | -- | -- |
| 64.86 | 0.375 | 6.63 | -- | 0.203 | -0.824 | -- | -- | 0.122 | 21 | 17.7 | 2694 | -- | -- |
| 75.81 | 0.407 | 6.6 | -0.00304 | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
| 73.43 | 0.401 | 6.61 | -- | 0.199 | -- | -- | -- | 0.198 | 22 | -- | -- | -- | -- |
| 67.04 | 0.381 | 6.62 | -- | -- | -0.791 | -- | -- | 0.119 | -- | 17.8 | 2512 | -- | -- |
| 75.81 | 0.406 | 6.6 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 29 | 61.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 49 | 61.62 | temperature | 20 | 4320 | < th | dose dependent | sin | 11 | NA |
| 68 | 61.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 95 | 61.77 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 113 | 61.81 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 200 | 62.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 265 | 62.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 286 | 62.16 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 307 | 62.19 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 327 | 62.22 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 353 | 62.26 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 388 | 62.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 530 | 62.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 621 | 62.57 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 724 | 62.64 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 20 |
| 791 | 62.70 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 840 | 62.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 852 | 62.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 17 |
| 885 | 62.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 898 | 62.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 901 | 62.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 913 | 62.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 930 | 62.82 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 20 |
| 965 | 62.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 17 |