Os02g0708200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Uridine kinase family protein.
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Os02g0708200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Uridine kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.72 | 0.234 | 12 | -0.525 | 0.0325 | -0.207 | -1.49 | 0.061 | -0.0257 | 8.75 | 0.4349 | 80 | -- | -- |
| 24.68 | 0.231 | 12 | -0.528 | 0.0363 | -0.214 | -1.44 | -- | -0.0255 | 8.64 | 0.4396 | 70 | -- | -- |
| 27.67 | 0.247 | 12 | -0.58 | 0.0823 | -0.21 | -- | -0.779 | -0.0369 | 10.2 | 0.9282 | 29 | -- | -- |
| 31.24 | 0.26 | 12 | -0.545 | 0.0564 | -0.238 | -- | -- | -0.0301 | 12.4 | 0.4 | 60 | -- | -- |
| 27.6 | 0.246 | 12 | -0.58 | -- | -0.158 | -- | -0.806 | -0.032 | -- | 2.25 | 34 | -- | -- |
| 27.51 | 0.246 | 12 | -0.531 | 0.146 | -- | 1.31 | -- | -0.034 | 21.4 | -- | -- | -- | -- |
| 33.06 | 0.269 | 12 | -0.583 | 0.171 | -- | -- | -- | -0.0386 | 0.0673 | -- | -- | -- | -- |
| 31.49 | 0.261 | 12 | -0.544 | -- | -0.177 | -- | -- | -0.0249 | -- | 0.4599 | 60 | -- | -- |
| 40.01 | 0.295 | 12 | -- | 0.0712 | -0.243 | -- | -- | -0.0216 | 12.5 | 0.21 | 58 | -- | -- |
| 34.89 | 0.276 | 12 | -0.578 | -- | -- | -- | -- | -0.0361 | -- | -- | -- | -- | -- |
| 42.02 | 0.303 | 12 | -- | 0.163 | -- | -- | -- | 0.0264 | 23.9 | -- | -- | -- | -- |
| 40.31 | 0.296 | 12 | -- | -- | -0.201 | -- | -- | -0.0132 | -- | 0.18 | 63 | -- | -- |
| 43.7 | 0.309 | 12 | -- | -- | -- | -- | -- | 0.028 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.91 | radiation | 1.0 | 90 | > th | dose independent | rect. | 10 | 22 |
| 4 | 24.11 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 15 | 24.48 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 13 |
| 17 | 24.49 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 1 |
| 19 | 24.54 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 21 | 24.57 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 22 | 24.58 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 27 | 24.60 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 28 | 24.62 | radiation | 1.0 | 90 | > th | dose independent | sin | 14 | NA |
| 29 | 24.63 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 14 |
| 34 | 24.67 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 37 | 24.75 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 39 | 24.76 | temperature | 20.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 43 | 24.78 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 45 | 24.81 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 48 | 24.83 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 21 |
| 51 | 24.86 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 54 | 24.87 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 55 | 24.87 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 56 | 24.87 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 65 | 24.88 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 66 | 24.89 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 69 | 24.89 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 86 | 24.91 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 93 | 24.92 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 94 | 24.92 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 97 | 24.92 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 143 | 24.92 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 144 | 24.92 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 145 | 24.92 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 146 | 24.92 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 19 | 10 |
| 149 | 24.92 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 159 | 24.93 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 21 |
| 171 | 24.93 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 186 | 24.94 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 223 | 24.97 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 17 |
| 244 | 24.98 | radiation | 1.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 267 | 24.99 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 19 |
| 273 | 25.00 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 13 |
| 283 | 25.00 | radiation | 1.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 285 | 25.00 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 369 | 25.02 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 11 |
| 405 | 25.03 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 439 | 25.05 | radiation | 1.0 | 90 | < th | dose independent | sin | 14 | NA |
| 446 | 25.05 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 448 | 25.06 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 3 |
| 449 | 25.06 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 7 |
| 477 | 25.07 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 16 |
| 478 | 25.07 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 13 | 18 |
| 489 | 25.08 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 10 |
| 490 | 25.08 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 11 |
| 491 | 25.08 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 17 |
| 521 | 25.10 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 3 |
| 543 | 25.11 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 13 | 6 |
| 545 | 25.11 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 13 |
| 560 | 25.12 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 570 | 25.13 | temperature | 30.0 | 30 | < th | dose independent | rect. | 16 | 13 |
| 580 | 25.13 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 611 | 25.15 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 7 |
| 677 | 25.19 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 701 | 25.21 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 5 |
| 703 | 25.21 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 13 |
| 708 | 25.21 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 712 | 25.22 | humidity | 90.0 | 10 | < th | dose independent | rect. | 13 | 6 |
| 714 | 25.22 | humidity | 60.0 | 90 | > th | dose independent | rect. | 16 | 13 |
| 715 | 25.22 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 13 |
| 717 | 25.22 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 14 |
| 730 | 25.23 | temperature | 25.0 | 720 | < th | dose independent | rect. | 23 | 9 |
| 731 | 25.23 | wind | 7.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 752 | 25.24 | wind | 5.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 756 | 25.24 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 759 | 25.24 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 10 | 9 |
| 798 | 25.26 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 10 | 9 |
| 805 | 25.27 | wind | 9.0 | 720 | < th | dose independent | rect. | 9 | 10 |
| 814 | 25.27 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 19 | 15 |
| 826 | 25.28 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 830 | 25.28 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 14 |
| 915 | 25.29 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 917 | 25.29 | wind | 5.0 | 90 | < th | dose independent | rect. | 13 | 5 |
| 939 | 25.30 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 940 | 25.30 | temperature | 30.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 942 | 25.30 | humidity | 50.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 944 | 25.30 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 950 | 25.30 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 952 | 25.30 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 964 | 25.30 | wind | 1.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 986 | 25.31 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 10 |