Os02g0705600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os02g0705600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.11 | 0.274 | 10.5 | 1.01 | 0.788 | 0.878 | 0.722 | -0.924 | 0.349 | 9.54 | 5.421 | 729 | -- | -- |
| 34.94 | 0.275 | 10.5 | 1.02 | 0.706 | 1.1 | 0.615 | -- | 0.354 | 10.6 | 3.933 | 714 | -- | -- |
| 35.61 | 0.278 | 10.5 | 1.01 | 0.848 | 0.853 | -- | -0.595 | 0.348 | 9.89 | 5.563 | 666 | -- | -- |
| 36.13 | 0.28 | 10.5 | 1.03 | 0.77 | 0.874 | -- | -- | 0.348 | 9.39 | 5.469 | 756 | -- | -- |
| 40.13 | 0.295 | 10.5 | 1.11 | -- | 1.82 | -- | 0.314 | 0.413 | -- | 3.306 | 956 | -- | -- |
| 37.73 | 0.288 | 10.5 | 0.971 | 1.28 | -- | 0.352 | -- | 0.304 | 7.88 | -- | -- | -- | -- |
| 38.08 | 0.289 | 10.5 | 0.98 | 1.28 | -- | -- | -- | 0.303 | 7.84 | -- | -- | -- | -- |
| 40.06 | 0.295 | 10.5 | 1.13 | -- | 1.82 | -- | -- | 0.418 | -- | 3.058 | 960 | -- | -- |
| 62.23 | 0.367 | 10.5 | -- | 0.771 | 0.81 | -- | -- | 0.254 | 9.09 | 10 | 770 | -- | -- |
| 127.34 | 0.527 | 10.5 | 0.995 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 63.4 | 0.372 | 10.5 | -- | 1.29 | -- | -- | -- | 0.194 | 7.79 | -- | -- | -- | -- |
| 71.67 | 0.394 | 10.5 | -- | -- | 1.73 | -- | -- | 0.29 | -- | 8.07 | 932 | -- | -- |
| 153.46 | 0.578 | 10.5 | -- | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.85 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 3 | 32.93 | humidity | 70.0 | 720 | > th | dose independent | rect. | 11 | 13 |
| 4 | 32.94 | humidity | 70.0 | 720 | > th | dose independent | rect. | 11 | 19 |
| 20 | 33.18 | humidity | 70.0 | 720 | > th | dose independent | rect. | 12 | 10 |
| 25 | 33.19 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 26 | 33.20 | humidity | 70.0 | 720 | > th | dose independent | sin | 18 | NA |
| 57 | 33.32 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 69 | 33.36 | radiation | 20.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 115 | 33.49 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 10 |
| 150 | 33.56 | humidity | 80.0 | 30 | < th | dose independent | rect. | 11 | 8 |
| 243 | 33.73 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 259 | 33.76 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 16 |
| 262 | 33.76 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 11 | 8 |
| 328 | 33.87 | radiation | 1.0 | 720 | < th | dose independent | sin | 17 | NA |
| 330 | 33.87 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 11 | 8 |
| 355 | 33.91 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 371 | 33.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 376 | 33.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 379 | 33.94 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 390 | 33.95 | temperature | 30.0 | 30 | < th | dose independent | rect. | 19 | 16 |
| 409 | 33.97 | humidity | 60.0 | 30 | > th | dose independent | rect. | 19 | 16 |
| 420 | 33.99 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 437 | 34.00 | radiation | 20.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 448 | 34.02 | wind | 1.0 | 30 | > th | dose independent | rect. | 11 | 8 |
| 455 | 34.03 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 16 |
| 458 | 34.03 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 23 |
| 460 | 34.03 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 16 |
| 462 | 34.04 | humidity | 50.0 | 30 | > th | dose independent | rect. | 11 | 8 |
| 471 | 34.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 8 |
| 473 | 34.05 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 11 | 8 |
| 476 | 34.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 16 |
| 478 | 34.05 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 16 |
| 479 | 34.06 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 11 | 8 |
| 485 | 34.06 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 11 | 8 |
| 497 | 34.08 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 8 |
| 499 | 34.08 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 501 | 34.08 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 505 | 34.09 | radiation | 10.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 507 | 34.09 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 11 | 8 |
| 508 | 34.09 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 16 |
| 509 | 34.09 | radiation | 40.0 | 30 | < th | dose independent | rect. | 19 | 16 |
| 532 | 34.12 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 534 | 34.12 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 580 | 34.16 | radiation | 1.0 | 720 | > th | dose independent | sin | 21 | NA |
| 581 | 34.16 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 586 | 34.16 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 587 | 34.16 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 597 | 34.17 | wind | 1.0 | 10 | > th | dose independent | rect. | 19 | 16 |
| 610 | 34.18 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 625 | 34.18 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 631 | 34.18 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 637 | 34.19 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 8 |
| 639 | 34.19 | radiation | 40.0 | 720 | < th | dose independent | rect. | 10 | 14 |
| 748 | 34.24 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 11 | 14 |
| 783 | 34.26 | radiation | 40.0 | 720 | < th | dose independent | rect. | 10 | 20 |
| 784 | 34.26 | humidity | 50.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 821 | 34.28 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 858 | 34.30 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 23 |
| 859 | 34.30 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 863 | 34.31 | radiation | 10.0 | 30 | > th | dose independent | rect. | 11 | 22 |
| 878 | 34.32 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 906 | 34.34 | humidity | 90.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 912 | 34.34 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 968 | 34.37 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 979 | 34.38 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 19 | 16 |