Os02g0704800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aspartate/ornithine carbamoyltransferase family protein.
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Os02g0704800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aspartate/ornithine carbamoyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.59 | 0.36 | 13.4 | 0.0502 | 0.779 | -0.681 | 0.522 | -1.86 | -0.0774 | 20.9 | 39.49 | 248 | -- | -- |
| 62.32 | 0.368 | 13.4 | 0.0384 | 0.783 | -0.553 | 0.304 | -- | -0.0762 | 20.8 | 37.27 | 246 | -- | -- |
| 59.48 | 0.359 | 13.4 | 0.0469 | 0.781 | -0.687 | -- | -1.69 | -0.0824 | 21 | 39.35 | 248 | -- | -- |
| 61.84 | 0.366 | 13.4 | 0.00348 | 0.822 | -0.655 | -- | -- | -0.0591 | 20.8 | 40.07 | 254 | -- | -- |
| 79.78 | 0.416 | 13.4 | 0.0608 | -- | -0.58 | -- | -0.662 | -0.0959 | -- | 22.32 | 804 | -- | -- |
| 66.27 | 0.382 | 13.4 | 0.027 | 0.785 | -- | 0.541 | -- | -0.0366 | 19.9 | -- | -- | -- | -- |
| 67.11 | 0.384 | 13.4 | 0.0116 | 0.783 | -- | -- | -- | -0.0365 | 20 | -- | -- | -- | -- |
| 75.34 | 0.404 | 13.4 | 0.121 | -- | -0.936 | -- | -- | -0.0706 | -- | 3.67 | 927 | -- | -- |
| 61.75 | 0.366 | 13.4 | -- | 0.828 | -0.709 | -- | -- | -0.0723 | 21 | 40.18 | 256 | -- | -- |
| 100.65 | 0.469 | 13.4 | 0.00412 | -- | -- | -- | -- | -0.0464 | -- | -- | -- | -- | -- |
| 67.12 | 0.383 | 13.4 | -- | 0.783 | -- | -- | -- | -0.0378 | 20 | -- | -- | -- | -- |
| 74.77 | 0.403 | 13.4 | -- | -- | -0.962 | -- | -- | -0.0723 | -- | 3.67 | 926 | -- | -- |
| 100.65 | 0.468 | 13.4 | -- | -- | -- | -- | -- | -0.0468 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.31 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 4 | 56.46 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 6 | 56.48 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 10 | 56.50 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 12 | 56.51 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 14 | 56.52 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 23 | 56.63 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 46 | 56.81 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 48 | 56.83 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 58 | 56.86 | humidity | 80 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 62 | 56.91 | humidity | 80 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 78 | 56.97 | humidity | 80 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 82 | 57.00 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 91 | 57.04 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 100 | 57.08 | humidity | 80 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 149 | 57.41 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 160 | 57.51 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 168 | 57.58 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 170 | 57.60 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 178 | 57.63 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 190 | 57.76 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 208 | 57.89 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 220 | 57.96 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 222 | 57.96 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 225 | 57.97 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 6 |
| 234 | 58.00 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 236 | 58.01 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 254 | 58.09 | wind | 7 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 258 | 58.11 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 268 | 58.14 | wind | 7 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 271 | 58.15 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 277 | 58.17 | wind | 9 | 14400 | < th | dose independent | sin | 2 | NA |
| 288 | 58.21 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 307 | 58.26 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 323 | 58.30 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 337 | 58.33 | wind | 9 | 14400 | > th | dose independent | sin | 1 | NA |
| 344 | 58.34 | wind | 7 | 14400 | > th | dose dependent | sin | 3 | NA |
| 379 | 58.43 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 23 |
| 388 | 58.46 | radiation | 20 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 427 | 58.57 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 484 | 58.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 511 | 58.69 | radiation | 40 | 270 | < th | dose independent | rect. | 14 | 23 |
| 531 | 58.71 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 555 | 58.74 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 677 | 58.85 | radiation | 40 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 689 | 58.87 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 5 |
| 727 | 58.90 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 751 | 58.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 765 | 58.94 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 13 |
| 794 | 58.97 | radiation | 40 | 270 | > th | dose independent | rect. | 15 | 23 |
| 796 | 58.97 | radiation | 30 | 270 | > th | dose dependent | sin | 2 | NA |
| 897 | 59.02 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 912 | 59.03 | atmosphere | 1000 | 30 | > th | dose independent | sin | 19 | NA |
| 913 | 59.03 | radiation | 40 | 270 | < th | dose independent | sin | 5 | NA |
| 930 | 59.04 | wind | 9 | 14400 | > th | dose independent | no | NA | NA |
| 956 | 59.05 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 972 | 59.06 | wind | 1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 999 | 59.07 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 11 |