Os02g0703900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nodulin-like protein.
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Os02g0703900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nodulin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.2 | 0.226 | 8.68 | 0.206 | 0.441 | -0.599 | 0.261 | -0.32 | 0.145 | 4.1 | 60.68 | 1135 | -- | -- |
| 23.12 | 0.224 | 8.68 | 0.211 | 0.452 | -0.54 | 0.209 | -- | 0.161 | 3.91 | 71.37 | 1156 | -- | -- |
| 23.23 | 0.225 | 8.68 | 0.194 | 0.451 | -0.528 | -- | -0.135 | 0.162 | 3.84 | 71.67 | 1136 | -- | -- |
| 23.25 | 0.225 | 8.68 | 0.202 | 0.453 | -0.542 | -- | -- | 0.164 | 3.84 | 71.75 | 1145 | -- | -- |
| 27.4 | 0.244 | 8.68 | 0.173 | -- | -0.603 | -- | 0.32 | 0.214 | -- | 83.03 | 377 | -- | -- |
| 29.36 | 0.254 | 8.66 | 0.106 | 0.399 | -- | 0.197 | -- | 0.219 | 4.65 | -- | -- | -- | -- |
| 29.46 | 0.254 | 8.66 | 0.105 | 0.4 | -- | -- | -- | 0.218 | 4.6 | -- | -- | -- | -- |
| 27.37 | 0.244 | 8.67 | 0.15 | -- | -0.603 | -- | -- | 0.208 | -- | 83 | 362 | -- | -- |
| 24.29 | 0.23 | 8.68 | -- | 0.453 | -0.496 | -- | -- | 0.158 | 3.83 | 74 | 1139 | -- | -- |
| 37.97 | 0.288 | 8.67 | 0.12 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 29.75 | 0.255 | 8.67 | -- | 0.402 | -- | -- | -- | 0.206 | 4.59 | -- | -- | -- | -- |
| 28.03 | 0.247 | 8.67 | -- | -- | -0.603 | -- | -- | 0.195 | -- | 83.68 | 362 | -- | -- |
| 38.35 | 0.289 | 8.67 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.52 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 3 | 23.58 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 4 | 23.60 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 7 | 23.66 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 11 | 23.68 | humidity | 50 | 4320 | < th | dose dependent | sin | 11 | NA |
| 12 | 23.69 | humidity | 50 | 4320 | > th | dose independent | sin | 16 | NA |
| 14 | 23.69 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 15 | 23.69 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 16 | 23.69 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 19 | 23.69 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 15 |
| 21 | 23.69 | wind | 9 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 24 | 23.70 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 26 | 23.70 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 28 | 23.70 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 13 |
| 37 | 23.71 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 45 | 23.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 80 | 23.72 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 94 | 23.73 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 103 | 23.73 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 121 | 23.74 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 143 | 23.76 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 144 | 23.76 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 13 |
| 149 | 23.77 | wind | 9 | 43200 | > th | dose independent | sin | 0 | NA |
| 151 | 23.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 168 | 23.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 175 | 23.78 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 196 | 23.79 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 201 | 23.79 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 211 | 23.79 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 217 | 23.79 | humidity | 50 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 223 | 23.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 236 | 23.80 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 263 | 23.80 | humidity | 60 | 1440 | < th | dose dependent | no | NA | NA |
| 265 | 23.80 | humidity | 60 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 460 | 23.82 | humidity | 50 | 1440 | > th | dose independent | no | NA | NA |
| 494 | 23.82 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 507 | 23.83 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 550 | 23.83 | humidity | 50 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 563 | 23.83 | humidity | 60 | 1440 | < th | dose dependent | sin | 21 | NA |
| 630 | 23.85 | wind | 9 | 43200 | < th | dose independent | sin | 0 | NA |
| 634 | 23.85 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 635 | 23.85 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 752 | 23.87 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 755 | 23.88 | humidity | 50 | 4320 | < th | dose independent | sin | 14 | NA |
| 775 | 23.90 | radiation | 10 | 270 | < th | dose independent | rect. | 5 | 20 |
| 833 | 23.94 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 847 | 23.96 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 851 | 23.96 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 852 | 23.96 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 854 | 23.96 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 859 | 23.97 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 900 | 23.99 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 910 | 24.00 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 929 | 24.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 940 | 24.03 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 957 | 24.03 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 22 |
| 981 | 24.04 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 983 | 24.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |