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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0703600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0689) R2 : 0.517
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.881 (0.197) R2dC : 0.0281 R2C : -0.0846
β3 : 4.24 (0.197) R2dE : 0.602 R2E : 0.488
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.138 (0.145) R2dN8 : 0.00177 R2N8 : -0.000913
σ : 1.3
deviance : 773.45
__
_____
C
peak time of C : 16.1
E
wheather : radiation
threshold : 7.45
memory length : 730
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.8
open length of G : 3.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
763.58 1.3 10.9 -0.55 1.01 4.22 1.57 0.372 0.0972 15.9 7.441 728 15.9 3.07
760.81 1.28 10.9 -0.55 0.942 4.31 1.26 -- 0.0969 15.9 7.449 730 15.8 3.02
766.57 1.29 10.9 -0.444 0.908 4.27 -- -0.0713 0.161 15.9 7.31 731 15.8 3.05
765.97 1.29 10.9 -0.52 0.919 4.3 -- -- 0.131 15.8 7.44 730 15.8 3.02
794.46 1.31 10.9 -0.402 -- 4.09 -- 0.00877 0.101 -- 6.29 730 15.8 2.75
951.87 1.45 11 -0.161 3.23 -- 0.949 -- -0.0206 22.9 -- -- -- --
955.65 1.45 11 -0.2 3.23 -- -- -- -0.0242 22.9 -- -- -- --
794.24 1.31 10.9 -0.451 -- 4.06 -- -- 0.0893 -- 6.25 728 15.8 2.77
773.45 1.3 10.9 -- 0.881 4.24 -- -- 0.138 16.1 7.45 730 15.8 3.02
1601.77 1.87 10.9 -0.13 -- -- -- -- -0.00202 -- -- -- -- --
956.7 1.45 11 -- 3.22 -- -- -- -0.00194 22.9 -- -- -- --
799.61 1.32 10.9 -- -- 4.04 -- -- 0.112 -- 6.25 728 15.8 2.77
1602.22 1.87 10.9 -- -- -- -- -- 0.0125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 779.60 radiation 10.0 720 < th dose dependent rect. 16 3
2 787.67 radiation 10.0 720 < th dose dependent rect. 14 5
4 791.59 radiation 10.0 720 < th dose independent rect. 16 3
5 791.83 radiation 10.0 720 < th dose dependent rect. 16 11
6 793.86 radiation 10.0 720 < th dose independent rect. 14 5
7 795.03 radiation 10.0 720 < th dose independent rect. 16 11
11 798.06 humidity 50.0 720 > th dose dependent rect. 17 2
14 803.72 radiation 10.0 720 < th dose dependent rect. 14 14
19 805.49 radiation 10.0 720 < th dose dependent rect. 10 9
22 806.41 radiation 10.0 720 < th dose independent rect. 14 14
35 811.09 humidity 70.0 720 > th dose independent rect. 17 2
49 816.65 radiation 10.0 720 < th dose dependent rect. 10 18
89 826.29 temperature 30.0 720 < th dose independent rect. 17 2
91 826.42 radiation 40.0 720 < th dose dependent rect. 15 14
99 828.24 precipitation 0.1 720 < th dose independent rect. 13 18
100 828.24 precipitation 0.1 720 < th dose dependent rect. 13 18
111 829.97 humidity 70.0 720 > th dose independent rect. 17 11
132 834.15 precipitation 0.1 720 < th dose independent rect. 19 22
133 834.15 precipitation 0.1 720 < th dose dependent rect. 19 22
134 834.25 temperature 20.0 30 > th dose independent rect. 18 11
137 834.59 temperature 30.0 720 < th dose independent rect. 17 11
147 836.15 humidity 80.0 10 > th dose independent rect. 18 2
160 837.91 radiation 10.0 720 > th dose independent rect. 12 19
162 838.02 radiation 10.0 720 > th dose independent rect. 12 6
184 838.62 humidity 50.0 720 > th dose dependent rect. 16 12
188 838.78 humidity 70.0 10 > th dose dependent rect. 18 2
211 840.80 radiation 10.0 720 < th dose dependent sin 17 NA
213 840.89 radiation 10.0 720 > th dose independent rect. 12 3
222 841.33 radiation 10.0 1440 < th dose dependent rect. 9 15
236 841.86 radiation 30.0 720 < th dose independent rect. 15 14
244 842.37 radiation 1.0 720 < th dose independent rect. 8 11
266 844.08 radiation 10.0 720 < th dose independent sin 16 NA
288 845.68 temperature 25.0 30 < th dose independent rect. 18 2
295 846.03 precipitation 0.1 720 < th dose independent rect. 3 22
296 846.03 precipitation 0.1 720 < th dose dependent rect. 3 22
347 847.71 radiation 10.0 720 > th dose independent rect. 14 1
353 847.81 radiation 1.0 720 < th dose dependent rect. 24 19
366 848.07 radiation 1.0 720 < th dose dependent rect. 22 21
369 848.15 radiation 10.0 1440 > th dose independent rect. 10 8
386 848.38 radiation 1.0 720 < th dose independent rect. 8 20
406 848.73 radiation 10.0 1440 < th dose dependent rect. 9 6
416 849.26 precipitation 0.1 90 < th dose independent rect. 20 23
417 849.26 precipitation 0.1 90 < th dose dependent rect. 20 23
422 849.48 temperature 20.0 30 > th dose independent rect. 21 8
440 850.02 humidity 50.0 720 > th dose independent rect. 17 10
457 850.59 radiation 1.0 720 < th dose independent rect. 24 19
458 850.64 precipitation 0.1 720 < th dose independent rect. 5 17
460 850.64 precipitation 0.1 720 < th dose dependent rect. 5 17
469 850.91 precipitation 0.1 720 < th dose independent rect. 10 15
470 850.91 precipitation 0.1 720 < th dose dependent rect. 10 15
478 851.00 precipitation 0.1 270 > th dose independent rect. 22 20
552 852.38 radiation 20.0 1440 < th dose dependent rect. 11 4
559 852.45 precipitation 0.1 270 > th dose independent rect. 2 16
574 852.74 radiation 10.0 1440 > th dose independent sin 19 NA
581 852.87 temperature 30.0 10 < th dose dependent rect. 18 2
585 852.95 wind 7.0 720 < th dose independent rect. 19 6
608 853.12 precipitation 0.1 270 > th dose dependent rect. 22 21
609 853.14 radiation 20.0 1440 < th dose independent rect. 12 1
677 853.94 precipitation 0.1 720 < th dose independent rect. 19 6
679 853.94 precipitation 0.1 720 < th dose dependent rect. 19 6
688 854.09 precipitation 0.1 720 < th dose independent rect. 13 9
689 854.09 precipitation 0.1 720 < th dose dependent rect. 13 9
712 854.59 precipitation 0.1 720 < th dose independent rect. 3 14
713 854.59 precipitation 0.1 720 < th dose dependent rect. 3 14
721 854.69 radiation 1.0 90 < th dose dependent rect. 5 15
725 854.77 precipitation 0.1 720 < th dose independent rect. 19 13
727 854.77 precipitation 0.1 720 < th dose dependent rect. 19 13
728 854.77 precipitation 0.1 270 > th dose dependent rect. 2 17
747 855.04 temperature 25.0 10 > th dose independent rect. 6 12
753 855.14 precipitation 0.1 90 > th dose independent rect. 19 23
829 856.08 radiation 20.0 4320 < th dose dependent rect. 21 8
880 857.47 temperature 25.0 30 < th dose independent rect. 12 9
890 857.57 precipitation 0.1 90 > th dose independent rect. 2 23
914 858.04 temperature 25.0 30 < th dose independent rect. 1 20
940 858.52 temperature 25.0 30 > th dose independent rect. 5 23
945 858.63 precipitation 0.1 90 > th dose independent rect. 5 23
955 858.79 humidity 80.0 720 < th dose independent rect. 12 3
978 859.21 precipitation 0.1 90 > th dose independent rect. 15 20
999 859.48 temperature 25.0 10 > th dose independent rect. 6 16