Os02g0701700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vacuolar (H+)-ATPase G subunit family protein.
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Os02g0701700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Vacuolar (H+)-ATPase G subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.34 | 0.576 | 3.72 | -0.478 | 1.31 | 0.686 | -1.49 | -0.185 | 0.111 | 6.25 | 21.6 | 669 | -- | -- |
| 150.44 | 0.571 | 3.72 | -0.428 | 1.31 | 0.695 | -1.41 | -- | 0.122 | 6.25 | 21.58 | 669 | -- | -- |
| 154.73 | 0.579 | 3.71 | -0.376 | 1.31 | 0.725 | -- | 0.265 | 0.139 | 6.48 | 21.5 | 669 | -- | -- |
| 154.94 | 0.58 | 3.71 | -0.454 | 1.3 | 0.724 | -- | -- | 0.12 | 6.52 | 21.58 | 717 | -- | -- |
| 235.15 | 0.714 | 3.74 | -0.442 | -- | 0.658 | -- | -0.0608 | 0.152 | -- | 21.71 | 1327 | -- | -- |
| 168.8 | 0.609 | 3.68 | -0.178 | 1.21 | -- | -1.59 | -- | 0.324 | 5.95 | -- | -- | -- | -- |
| 174.52 | 0.619 | 3.67 | -0.189 | 1.2 | -- | -- | -- | 0.331 | 6.22 | -- | -- | -- | -- |
| 235.13 | 0.714 | 3.74 | -0.42 | -- | 0.656 | -- | -- | 0.155 | -- | 21.7 | 1262 | -- | -- |
| 159.82 | 0.589 | 3.7 | -- | 1.29 | 0.613 | -- | -- | 0.198 | 6.46 | 21.55 | 667 | -- | -- |
| 249.27 | 0.738 | 3.69 | -0.156 | -- | -- | -- | -- | 0.357 | -- | -- | -- | -- | -- |
| 175.46 | 0.62 | 3.67 | -- | 1.2 | -- | -- | -- | 0.352 | 6.23 | -- | -- | -- | -- |
| 238.99 | 0.72 | 3.72 | -- | -- | 0.507 | -- | -- | 0.223 | -- | 22.24 | 1266 | -- | -- |
| 249.91 | 0.738 | 3.69 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.44 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 3 | 145.38 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 16 | 146.44 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 6 |
| 60 | 148.09 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 3 |
| 102 | 149.17 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 103 | 149.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 110 | 149.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 115 | 149.39 | temperature | 10.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 131 | 149.59 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 208 | 150.77 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 247 | 151.25 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 303 | 151.71 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 319 | 151.82 | temperature | 25.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 416 | 152.54 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 424 | 152.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 438 | 152.62 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 463 | 152.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 480 | 152.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 481 | 152.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 511 | 153.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 514 | 153.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 527 | 153.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 528 | 153.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 534 | 153.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 536 | 153.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 555 | 153.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 556 | 153.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 561 | 153.28 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 593 | 153.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 14 |
| 635 | 153.71 | temperature | 10.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 639 | 153.76 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 7 |
| 662 | 153.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 675 | 153.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 680 | 153.98 | temperature | 25.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 687 | 154.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 726 | 154.21 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 747 | 154.30 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 750 | 154.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 17 |
| 757 | 154.32 | temperature | 20.0 | 720 | > th | dose independent | sin | 9 | NA |
| 758 | 154.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 776 | 154.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 778 | 154.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 779 | 154.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 782 | 154.42 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 785 | 154.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 19 |
| 792 | 154.46 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 19 |
| 796 | 154.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 800 | 154.51 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 21 |
| 821 | 154.58 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 825 | 154.60 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 2 |
| 864 | 154.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 866 | 154.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 876 | 154.74 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 898 | 154.82 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 928 | 154.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 931 | 154.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 945 | 155.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 958 | 155.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 967 | 155.04 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 984 | 155.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 987 | 155.09 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 997 | 155.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 1000 | 155.12 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |