FiT-DB / Search/ Help/ Sample detail

Os02g0701600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tocopherol O-methyltransferase, chloroplast precursor (EC 2.1.1.95) (Gamma-tocopherol methyltransferase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0196) R2 : 0.0258
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.143 (0.0413) R2dN8 : 0.0333 R2N8 : 0.0258
σ : 0.37
deviance : 62.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.84 0.277 12.6 -0.897 0.449 -0.91 -2 3.84 -0.301 4.15 0.009984 710 -- --
38.36 0.288 12.6 -0.879 0.384 -1.18 1.21 -- -0.342 8.04 0.0006066 963 -- --
36.7 0.282 12.6 -0.777 0.0487 -0.634 -- 2.73 -0.206 3.75 0.03695 952 -- --
42.28 0.303 12.5 -0.761 0.402 -1.15 -- -- -0.282 7.37 0.17 936 -- --
36.08 0.28 12.6 -0.864 -- -0.607 -- 2.47 -0.238 -- 0.05 964 -- --
42.49 0.306 12.5 -0.645 0.337 -- -1.19 -- -0.205 19.6 -- -- -- --
46.46 0.319 12.5 -0.616 0.337 -- -- -- -0.207 19.5 -- -- -- --
43.46 0.307 12.5 -0.713 -- -0.651 -- -- -0.25 -- 0.17 1075 -- --
56.32 0.351 12.5 -- 0.393 -0.0775 -- -- -0.141 20.2 2.019 918 -- --
52.54 0.339 12.5 -0.621 -- -- -- -- -0.212 -- -- -- -- --
56.44 0.351 12.5 -- 0.342 -- -- -- -0.139 19.4 -- -- -- --
56 0.349 12.5 -- -- -0.495 -- -- -0.162 -- 2.568 926 -- --
62.69 0.37 12.5 -- -- -- -- -- -0.143 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.07 humidity 50.0 14400 < th dose dependent rect. 16 1
2 34.25 wind 1.0 14400 < th dose independent rect. 20 4
3 34.26 humidity 50.0 14400 < th dose independent rect. 16 1
4 34.44 wind 7.0 14400 > th dose independent rect. 21 1
5 34.47 precipitation 0.1 14400 < th dose independent rect. 20 1
6 34.47 precipitation 0.1 14400 < th dose dependent rect. 20 1
7 34.53 precipitation 0.1 14400 > th dose independent rect. 20 1
8 34.60 precipitation 0.1 14400 > th dose dependent rect. 20 1
9 34.63 wind 1.0 14400 < th dose independent rect. 18 6
10 34.66 wind 7.0 14400 < th dose independent rect. 21 1
12 34.74 precipitation 0.1 14400 > th dose dependent rect. 20 6
14 34.85 humidity 50.0 14400 > th dose independent rect. 16 1
15 34.85 wind 1.0 14400 > th dose independent rect. 20 4
16 34.89 precipitation 0.1 14400 > th dose dependent rect. 20 3
19 34.91 humidity 50.0 14400 < th dose dependent rect. 16 17
20 34.92 precipitation 0.1 14400 > th dose dependent rect. 16 2
22 34.96 humidity 50.0 14400 > th dose independent rect. 16 18
40 35.08 humidity 80.0 1440 > th dose independent rect. 9 4
43 35.16 humidity 90.0 14400 > th dose dependent rect. 10 1
44 35.18 wind 7.0 14400 > th dose independent rect. 21 3
45 35.18 radiation 1.0 1440 < th dose dependent rect. 8 22
46 35.20 humidity 80.0 1440 < th dose independent rect. 9 4
48 35.20 radiation 1.0 720 < th dose dependent rect. 21 21
49 35.20 radiation 1.0 720 < th dose dependent rect. 6 23
52 35.22 radiation 1.0 720 < th dose dependent sin 0 NA
57 35.25 radiation 1.0 720 < th dose dependent rect. 3 15
59 35.26 humidity 50.0 14400 < th dose independent rect. 16 19
68 35.33 radiation 1.0 1440 < th dose dependent rect. 8 11
75 35.33 radiation 1.0 1440 < th dose dependent rect. 8 19
97 35.42 humidity 60.0 14400 < th dose dependent rect. 18 1
99 35.44 wind 1.0 14400 < th dose dependent rect. 18 6
102 35.47 radiation 1.0 1440 < th dose independent rect. 10 1
103 35.47 atmosphere 995.0 14400 > th dose independent rect. 5 8
104 35.47 radiation 1.0 1440 < th dose dependent rect. 10 1
119 35.51 humidity 50.0 14400 > th dose independent rect. 16 10
120 35.51 humidity 50.0 14400 > th dose independent rect. 16 12
123 35.51 radiation 1.0 720 < th dose dependent no NA NA
124 35.51 wind 1.0 14400 < th dose dependent rect. 20 4
146 35.53 humidity 50.0 14400 > th dose independent rect. 16 4
147 35.53 radiation 1.0 720 < th dose dependent rect. 1 23
148 35.53 radiation 1.0 720 < th dose dependent rect. 12 23
157 35.54 radiation 1.0 720 < th dose dependent rect. 3 23
164 35.56 wind 7.0 14400 > th dose dependent rect. 21 1
167 35.57 radiation 1.0 720 > th dose independent rect. 8 22
170 35.57 temperature 20.0 720 < th dose dependent rect. 8 14
172 35.58 radiation 1.0 720 < th dose independent rect. 8 9
175 35.60 wind 7.0 14400 < th dose independent rect. 21 3
177 35.60 wind 9.0 43200 > th dose dependent rect. 17 3
181 35.60 wind 9.0 43200 > th dose dependent rect. 16 14
196 35.64 wind 1.0 14400 < th dose dependent rect. 23 1
205 35.66 temperature 25.0 720 < th dose dependent rect. 5 18
206 35.67 radiation 1.0 1440 > th dose independent rect. 10 2
208 35.67 humidity 80.0 720 > th dose independent rect. 9 8
215 35.68 atmosphere 1005.0 43200 < th dose dependent rect. 12 4
236 35.69 atmosphere 1005.0 43200 < th dose dependent rect. 11 6
238 35.70 radiation 1.0 720 > th dose independent sin 22 NA
240 35.70 radiation 1.0 720 > th dose independent rect. 9 8
241 35.70 temperature 25.0 1440 < th dose dependent rect. 17 3
248 35.71 atmosphere 1005.0 43200 < th dose dependent rect. 4 3
258 35.72 radiation 1.0 720 < th dose dependent rect. 23 19
267 35.75 humidity 80.0 1440 < th dose independent rect. 11 1
270 35.75 wind 9.0 43200 > th dose independent rect. 16 18
273 35.75 atmosphere 1005.0 43200 < th dose dependent rect. 2 15
278 35.75 radiation 1.0 720 < th dose dependent rect. 15 23
279 35.76 radiation 1.0 720 < th dose independent rect. 7 18
282 35.76 humidity 80.0 1440 > th dose dependent rect. 10 3
289 35.77 radiation 1.0 720 < th dose independent sin 22 NA
290 35.77 temperature 25.0 1440 < th dose dependent rect. 18 1
295 35.77 atmosphere 1005.0 43200 < th dose dependent rect. 3 5
298 35.77 humidity 80.0 720 > th dose dependent rect. 9 8
326 35.78 atmosphere 995.0 14400 < th dose dependent rect. 5 10
330 35.78 radiation 1.0 1440 < th dose dependent rect. 17 23
331 35.79 humidity 80.0 1440 > th dose independent rect. 11 1
359 35.79 radiation 1.0 1440 < th dose dependent rect. 4 19
369 35.80 humidity 80.0 1440 > th dose dependent rect. 9 5
404 35.81 radiation 1.0 1440 > th dose independent rect. 8 11
414 35.81 atmosphere 1005.0 43200 < th dose dependent rect. 2 7
425 35.82 radiation 1.0 1440 < th dose independent rect. 8 22
446 35.83 precipitation 0.1 14400 > th dose independent rect. 20 6
463 35.84 wind 9.0 43200 > th dose independent rect. 16 14
475 35.85 atmosphere 1005.0 14400 < th dose independent rect. 9 4
477 35.85 precipitation 0.1 14400 < th dose independent rect. 20 6
486 35.85 precipitation 0.1 14400 < th dose dependent rect. 20 6
488 35.85 atmosphere 995.0 14400 < th dose dependent rect. 3 13
509 35.87 precipitation 0.1 43200 < th dose independent rect. 14 2
533 35.87 precipitation 0.1 43200 < th dose dependent rect. 14 2
550 35.88 wind 9.0 14400 > th dose dependent rect. 22 3
573 35.89 atmosphere 1005.0 43200 < th dose dependent sin 3 NA
576 35.89 wind 9.0 43200 > th dose dependent rect. 16 7
587 35.90 atmosphere 995.0 43200 > th dose independent rect. 14 13
588 35.90 atmosphere 995.0 14400 < th dose independent rect. 2 13
636 35.92 radiation 20.0 4320 > th dose dependent rect. 6 1
644 35.92 radiation 1.0 1440 < th dose dependent rect. 12 7
668 35.93 wind 7.0 14400 > th dose independent rect. 6 3
697 35.94 wind 9.0 14400 < th dose independent rect. 18 2
700 35.94 atmosphere 995.0 43200 < th dose independent rect. 14 13
724 35.95 precipitation 0.1 43200 > th dose independent rect. 14 2
749 35.96 wind 9.0 43200 < th dose independent rect. 17 13
769 35.97 wind 9.0 43200 < th dose independent rect. 17 6
785 35.97 wind 9.0 43200 < th dose independent rect. 16 18
789 35.97 atmosphere 1000.0 14400 < th dose dependent rect. 23 1
801 35.98 wind 9.0 43200 < th dose independent rect. 17 4
830 35.99 humidity 80.0 720 < th dose independent rect. 9 8
856 36.00 wind 9.0 43200 > th dose independent rect. 17 4
858 36.00 wind 9.0 43200 > th dose independent rect. 17 6
859 36.00 atmosphere 995.0 43200 > th dose independent rect. 15 10
880 36.01 atmosphere 1005.0 14400 < th dose independent rect. 9 1
882 36.01 wind 7.0 14400 < th dose independent rect. 6 3
885 36.01 atmosphere 995.0 43200 < th dose independent rect. 15 10
924 36.02 atmosphere 1000.0 43200 < th dose independent rect. 3 1
946 36.03 radiation 1.0 1440 > th dose independent rect. 8 6
965 36.04 radiation 1.0 720 < th dose independent rect. 9 6
973 36.04 atmosphere 1000.0 14400 < th dose dependent rect. 20 4
985 36.05 atmosphere 1005.0 14400 > th dose independent rect. 9 3
992 36.05 atmosphere 1005.0 43200 < th dose dependent no NA NA