Os02g0699900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0699900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.44 | 0.337 | 8.49 | 0.721 | 0.871 | -0.199 | 0.221 | -3.31 | -0.15 | 16.9 | 32.4 | 1161 | -- | -- |
| 52.16 | 0.336 | 8.44 | 1.24 | 0.843 | -0.548 | 0.132 | -- | -0.139 | 16.9 | 32 | 1162 | -- | -- |
| 51.56 | 0.334 | 8.49 | 0.722 | 0.872 | -0.199 | -- | -3.31 | -0.15 | 16.9 | 32.41 | 1160 | -- | -- |
| 52.07 | 0.336 | 8.44 | 1.27 | 0.876 | -0.564 | -- | -- | -0.149 | 16.9 | 32.31 | 1162 | -- | -- |
| 91.14 | 0.445 | 8.5 | 0.631 | -- | -0.235 | -- | -3.85 | -0.183 | -- | 32.3 | 1172 | -- | -- |
| 67.07 | 0.384 | 8.41 | 1.11 | 0.928 | -- | 0.34 | -- | -0.0454 | 16.6 | -- | -- | -- | -- |
| 67.38 | 0.384 | 8.41 | 1.11 | 0.93 | -- | -- | -- | -0.0436 | 16.6 | -- | -- | -- | -- |
| 92.27 | 0.447 | 8.43 | 1.26 | -- | -0.647 | -- | -- | -0.189 | -- | 32 | 1190 | -- | -- |
| 91.71 | 0.446 | 8.46 | -- | 0.867 | -0.42 | -- | -- | -0.262 | 16.9 | 33.2 | 1095 | -- | -- |
| 113.43 | 0.498 | 8.4 | 1.07 | -- | -- | -- | -- | -0.068 | -- | -- | -- | -- | -- |
| 99.89 | 0.468 | 8.43 | -- | 0.909 | -- | -- | -- | -0.167 | 16.6 | -- | -- | -- | -- |
| 131.74 | 0.535 | 8.45 | -- | -- | -0.424 | -- | -- | -0.259 | -- | 33.1 | 1129 | -- | -- |
| 143.9 | 0.56 | 8.43 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.22 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 3 | 53.28 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 4 | 53.33 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 21 | 53.45 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 24 | 53.55 | wind | 3.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 26 | 53.58 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 30 | 53.71 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 9 |
| 33 | 53.74 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 53 | 53.88 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 67 | 53.89 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 71 | 53.92 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 95 | 54.05 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 131 | 54.10 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 137 | 54.17 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 9 |
| 145 | 54.20 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 164 | 54.24 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 166 | 54.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 180 | 54.33 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 211 | 54.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 214 | 54.42 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 223 | 54.46 | wind | 7.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 225 | 54.47 | wind | 5.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 259 | 54.56 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 262 | 54.57 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 266 | 54.59 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 14 |
| 283 | 54.61 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 303 | 54.62 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 320 | 54.63 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 420 | 54.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 427 | 54.70 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 2 |
| 457 | 54.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 458 | 54.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 474 | 54.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 476 | 54.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 481 | 54.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 482 | 54.79 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 485 | 54.81 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 490 | 54.83 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 492 | 54.84 | wind | 7.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 499 | 54.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 500 | 54.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 502 | 54.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 505 | 54.90 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 510 | 54.91 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 527 | 54.94 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 586 | 55.00 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 587 | 55.00 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 588 | 55.00 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 598 | 55.04 | temperature | 30.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 601 | 55.05 | temperature | 30.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 608 | 55.06 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 628 | 55.08 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 633 | 55.09 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 634 | 55.10 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 641 | 55.12 | wind | 1.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 647 | 55.14 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 649 | 55.14 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 719 | 55.22 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 737 | 55.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 738 | 55.24 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 739 | 55.24 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 741 | 55.24 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 742 | 55.24 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 750 | 55.24 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 752 | 55.24 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 756 | 55.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 765 | 55.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 784 | 55.30 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 791 | 55.32 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 796 | 55.33 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 823 | 55.39 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 846 | 55.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 867 | 55.43 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 874 | 55.44 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 875 | 55.45 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 898 | 55.50 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 901 | 55.50 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 905 | 55.52 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 914 | 55.54 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 917 | 55.54 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 918 | 55.54 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 919 | 55.54 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 928 | 55.57 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 956 | 55.59 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 960 | 55.60 | wind | 3.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 971 | 55.62 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 976 | 55.63 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 981 | 55.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 983 | 55.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 984 | 55.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 987 | 55.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 988 | 55.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 989 | 55.64 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 991 | 55.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |