FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0699000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0594) R2 : 0.0985
β1 : -0.203 (0.222) R2dD : 0.0019 R2D : -0.00203
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.45 (0.528) R2dE : 0.155 R2E : -0.0294
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 20.1 (4.06) R2dD*E : 0.0955 R2D*E : -0.0527
γ1 : -0.347 (0.128) R2dN8 : 0.0167 R2N8 : -0.00396
σ : 1.1
deviance : 554.31
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 62.41
memory length : 70
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 0.877

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
556.86 1.11 3.47 -0.308 0.0327 2.79 -0.324 13.5 -0.307 17.9 61.05 76 12 0.912
585.69 1.13 3.43 -0.457 0.0905 2.31 0.0128 -- -0.274 5.05 61.81 57 12.3 1.07
555.7 1.1 3.46 -0.205 0.0713 2.97 -- 16.3 -0.29 15.6 61.24 72 12 0.915
583.18 1.12 3.43 -0.443 0.0456 2 -- -- -0.238 5.63 59.67 58 12.1 1.43
554.31 1.1 3.48 -0.203 -- 3.45 -- 20.1 -0.347 -- 62.41 70 12.1 0.877
603.69 1.15 3.42 -0.488 0.223 -- 0.362 -- -0.186 13.8 -- -- -- --
604.2 1.15 3.42 -0.476 0.224 -- -- -- -0.184 14 -- -- -- --
581.63 1.12 3.43 -0.414 -- 1.57 -- -- -0.273 -- 58 57 12 1.45
586.96 1.13 3.43 -- 0.0571 1.5 -- -- -0.222 15.1 57.63 41 12 1.52
607.23 1.15 3.42 -0.485 -- -- -- -- -0.189 -- -- -- -- --
610.17 1.16 3.4 -- 0.233 -- -- -- -0.131 14 -- -- -- --
587.04 1.13 3.42 -- -- 1.53 -- -- -0.228 -- 55 44 12.1 1.49
613.43 1.16 3.41 -- -- -- -- -- -0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 565.64 humidity 60.0 90 > th dose dependent rect. 12 1
3 569.01 humidity 70.0 90 > th dose independent rect. 12 1
4 569.36 temperature 25.0 30 > th dose dependent rect. 12 1
5 569.42 temperature 10.0 1440 > th dose independent rect. 13 1
9 569.42 atmosphere 995.0 1440 > th dose independent rect. 13 1
12 569.42 temperature 10.0 1440 > th dose independent rect. 14 23
15 569.52 temperature 25.0 30 > th dose independent rect. 12 1
16 569.68 humidity 80.0 30 < th dose dependent rect. 12 1
17 569.75 radiation 40.0 30 > th dose independent rect. 12 1
18 569.95 atmosphere 1005.0 90 > th dose dependent rect. 12 1
22 570.58 humidity 60.0 10 > th dose independent rect. 12 2
24 570.90 radiation 30.0 30 > th dose dependent rect. 12 1
25 570.95 radiation 10.0 30 > th dose dependent rect. 12 1
30 571.36 radiation 20.0 30 > th dose independent rect. 12 1
33 571.58 humidity 70.0 30 < th dose independent rect. 12 1
36 572.16 wind 3.0 30 > th dose independent rect. 12 1
37 572.40 wind 7.0 30 < th dose independent rect. 12 1
38 572.55 atmosphere 1010.0 30 < th dose independent rect. 12 1
40 572.61 temperature 10.0 30 > th dose independent rect. 12 1
42 572.61 atmosphere 995.0 30 > th dose independent rect. 12 1
45 572.61 precipitation 0.1 30 < th dose independent rect. 12 1
46 572.61 temperature 10.0 30 > th dose independent rect. 13 23
47 572.61 precipitation 0.1 30 < th dose dependent rect. 12 1
48 572.74 atmosphere 995.0 30 > th dose dependent rect. 12 1
49 572.82 atmosphere 1005.0 90 > th dose independent rect. 12 1
52 573.02 wind 9.0 30 < th dose dependent rect. 12 1
57 573.51 temperature 20.0 720 > th dose independent rect. 13 7
60 573.76 wind 1.0 30 > th dose dependent rect. 12 1
61 573.85 temperature 30.0 30 < th dose independent rect. 12 1
63 574.19 atmosphere 1015.0 30 < th dose dependent rect. 12 1
66 574.30 temperature 20.0 270 < th dose independent rect. 11 8
68 574.62 temperature 20.0 270 < th dose dependent rect. 12 7
71 574.86 temperature 20.0 270 < th dose independent rect. 15 4
81 575.37 atmosphere 1000.0 10 < th dose dependent rect. 6 2
82 575.41 atmosphere 1000.0 10 < th dose independent rect. 6 2
85 575.55 humidity 70.0 10 < th dose independent rect. 7 1
145 575.55 humidity 70.0 10 < th dose dependent rect. 7 1
208 575.70 wind 9.0 30 < th dose independent rect. 13 23
213 575.83 atmosphere 1000.0 90 < th dose independent rect. 6 1
217 575.93 temperature 20.0 10 > th dose independent rect. 14 15
241 576.44 temperature 30.0 10 > th dose independent rect. 14 1
244 576.75 wind 1.0 10 < th dose dependent rect. 7 1
246 576.84 wind 1.0 10 < th dose independent rect. 7 1
258 577.80 wind 1.0 90 < th dose dependent rect. 13 2
272 578.27 atmosphere 1005.0 30 > th dose dependent rect. 12 11
281 578.57 wind 5.0 10 > th dose dependent rect. 20 2
314 580.08 radiation 30.0 90 < th dose independent rect. 12 1
321 580.32 atmosphere 1000.0 30 > th dose dependent rect. 12 14
334 581.05 temperature 30.0 10 > th dose independent rect. 13 21
340 581.43 temperature 20.0 1440 > th dose independent rect. 18 1
356 582.01 temperature 20.0 10 > th dose independent rect. 8 21
358 582.05 atmosphere 1000.0 30 > th dose dependent rect. 12 19
365 582.26 radiation 40.0 90 < th dose dependent rect. 12 1
367 582.33 temperature 30.0 10 > th dose independent rect. 13 5
392 582.60 wind 5.0 10 > th dose independent rect. 20 3
433 583.31 atmosphere 1010.0 10 < th dose dependent rect. 12 17
490 584.24 temperature 20.0 720 > th dose independent rect. 13 12
509 584.42 temperature 20.0 720 > th dose independent sin 20 NA
510 584.44 atmosphere 1000.0 270 < th dose independent rect. 4 1
511 584.44 atmosphere 1000.0 270 < th dose dependent rect. 4 1
548 585.01 temperature 20.0 30 > th dose independent sin 16 NA
558 585.11 temperature 20.0 720 > th dose independent rect. 7 18
575 585.24 temperature 20.0 720 < th dose independent sin 20 NA
579 585.26 atmosphere 1005.0 30 > th dose independent rect. 12 14
596 585.52 wind 7.0 43200 < th dose independent rect. 17 1
597 585.52 atmosphere 1010.0 10 < th dose dependent sin 15 NA
605 585.60 humidity 80.0 10 < th dose independent rect. 20 2
615 585.67 atmosphere 1010.0 10 < th dose dependent rect. 18 11
630 585.79 atmosphere 1010.0 10 < th dose dependent rect. 9 20
670 585.95 radiation 40.0 14400 < th dose dependent rect. 24 5
676 585.98 atmosphere 1010.0 270 < th dose dependent rect. 9 19
700 586.14 temperature 25.0 270 < th dose dependent rect. 16 12
751 586.38 wind 5.0 270 > th dose dependent rect. 18 2
757 586.40 wind 7.0 43200 > th dose dependent rect. 16 1
773 586.46 temperature 20.0 1440 > th dose independent rect. 15 4
776 586.47 atmosphere 1005.0 270 < th dose independent rect. 9 19
828 586.69 atmosphere 1010.0 90 < th dose dependent rect. 19 10
856 586.80 radiation 30.0 10 < th dose independent rect. 13 2
896 586.88 atmosphere 1005.0 270 > th dose dependent rect. 18 2
899 586.89 wind 7.0 43200 > th dose independent rect. 17 1
949 587.03 humidity 80.0 30 < th dose dependent rect. 20 2
952 587.03 atmosphere 1000.0 270 > th dose dependent rect. 10 21
968 587.11 atmosphere 1000.0 30 > th dose dependent rect. 19 12
975 587.13 atmosphere 995.0 10 > th dose dependent rect. 13 23