Os02g0698100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0698100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Galactose oxidase, central domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.5 | 0.295 | 8.12 | 2.09 | 0.0119 | -0.615 | -0.809 | 1.54 | 0.621 | 6.72 | 21.25 | 1461 | -- | -- |
| 42.45 | 0.303 | 8.18 | 1.71 | 0.00686 | -0.542 | -0.779 | -- | 0.507 | 6.91 | 19.26 | 5902 | -- | -- |
| 40.94 | 0.298 | 8.13 | 2.06 | 0.0762 | -0.633 | -- | 1.52 | 0.618 | 1.86 | 21.53 | 1367 | -- | -- |
| 43.21 | 0.306 | 8.17 | 1.75 | 0.0521 | -0.758 | -- | -- | 0.534 | 0.732 | 11.98 | 5594 | -- | -- |
| 41.14 | 0.299 | 8.12 | 2.09 | -- | -0.623 | -- | 1.59 | 0.625 | -- | 21.63 | 1471 | -- | -- |
| 50.5 | 0.333 | 8.21 | 1.42 | 0.00296 | -- | -0.821 | -- | 0.365 | 6.83 | -- | -- | -- | -- |
| 52.2 | 0.338 | 8.21 | 1.41 | 0.0207 | -- | -- | -- | 0.367 | 1.07 | -- | -- | -- | -- |
| 43.2 | 0.306 | 8.18 | 1.59 | -- | -0.515 | -- | -- | 0.488 | -- | 21 | 1443 | -- | -- |
| 104.17 | 0.475 | 8.24 | -- | 0.0539 | -0.097 | -- | -- | 0.223 | 0.133 | 12.26 | 758 | -- | -- |
| 52.23 | 0.338 | 8.21 | 1.41 | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
| 104.29 | 0.478 | 8.24 | -- | 0.0465 | -- | -- | -- | 0.21 | 2.33 | -- | -- | -- | -- |
| 102.8 | 0.472 | 8.24 | -- | -- | -0.235 | -- | -- | 0.219 | -- | 34.57 | 1184 | -- | -- |
| 104.42 | 0.477 | 8.24 | -- | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 3 | 37.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 27 | 37.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 34 | 37.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 93 | 38.12 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 100 | 38.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 104 | 38.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 112 | 38.19 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 161 | 38.46 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 167 | 38.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 171 | 38.52 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 176 | 38.54 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 185 | 38.57 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 190 | 38.58 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 191 | 38.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 195 | 38.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 316 | 38.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 322 | 38.95 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 333 | 38.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 346 | 38.98 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 374 | 39.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 394 | 39.05 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 395 | 39.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 11 |
| 405 | 39.07 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 446 | 39.13 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 465 | 39.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 476 | 39.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 487 | 39.18 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 561 | 39.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 562 | 39.28 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 574 | 39.29 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 580 | 39.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 612 | 39.32 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 621 | 39.33 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 644 | 39.35 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 676 | 39.38 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 680 | 39.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 687 | 39.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 688 | 39.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 707 | 39.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 723 | 39.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 734 | 39.43 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 736 | 39.43 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 753 | 39.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 772 | 39.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 787 | 39.46 | wind | 5 | 43200 | > th | dose dependent | sin | 14 | NA |
| 807 | 39.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 809 | 39.48 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 820 | 39.49 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 877 | 39.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 878 | 39.54 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 973 | 39.60 | wind | 7 | 43200 | < th | dose independent | sin | 14 | NA |