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Os02g0698000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.5 (0.0151) R2 : 0.463
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.756 (0.0395) R2dC : 0.432 R2C : 0.413
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.181 (0.0317) R2dN8 : 0.0495 R2N8 : 0.0302
σ : 0.284
deviance : 36.98
__
_____
C
peak time of C : 5.82
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.82 0.229 16.5 -0.494 0.901 -0.362 1.52 -0.18 -0.287 5.86 90.81 323 -- --
23.86 0.228 16.5 -0.504 0.898 -0.367 1.47 -- -0.291 5.86 90.95 325 -- --
27.46 0.244 16.5 -0.513 0.876 -0.262 -- 0.718 -0.275 5.78 88.51 340 -- --
28.56 0.249 16.5 -0.48 0.871 -0.242 -- -- -0.268 5.73 87.84 317 -- --
40.54 0.297 16.5 -0.555 -- 0.701 -- 0.785 -0.178 -- 63.27 458 -- --
25.82 0.238 16.5 -0.534 0.756 -- 1.27 -- -0.234 5.94 -- -- -- --
29.73 0.255 16.5 -0.524 0.764 -- -- -- -0.239 5.79 -- -- -- --
41.13 0.299 16.6 -0.511 -- 0.845 -- -- -0.225 -- 44.33 447 -- --
34.76 0.275 16.5 -- 0.912 -0.304 -- -- -0.229 5.74 86 307 -- --
59.98 0.362 16.5 -0.501 -- -- -- -- -0.221 -- -- -- -- --
36.98 0.284 16.5 -- 0.756 -- -- -- -0.181 5.82 -- -- -- --
47.4 0.321 16.5 -- -- 0.835 -- -- -0.153 -- 41 461 -- --
66.59 0.381 16.5 -- -- -- -- -- -0.166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.16 atmosphere 995.0 270 > th dose independent rect. 14 17
2 21.20 atmosphere 995.0 270 > th dose independent rect. 13 8
5 21.24 wind 1.0 270 > th dose independent rect. 8 17
6 21.29 temperature 10.0 270 > th dose dependent rect. 8 5
8 21.33 atmosphere 995.0 270 > th dose independent rect. 3 15
10 21.34 wind 1.0 270 > th dose independent rect. 21 16
11 21.37 wind 9.0 270 < th dose independent rect. 13 8
12 21.38 radiation 1.0 270 > th dose independent rect. 7 7
13 21.38 temperature 15.0 270 > th dose independent rect. 21 16
14 21.39 precipitation 0.1 270 < th dose independent rect. 21 16
15 21.39 precipitation 0.1 270 < th dose dependent rect. 21 16
16 21.40 temperature 10.0 270 > th dose independent rect. 13 8
18 21.40 atmosphere 995.0 270 > th dose independent rect. 21 16
22 21.42 wind 9.0 270 < th dose independent rect. 21 16
23 21.42 wind 9.0 270 < th dose independent rect. 14 17
24 21.42 atmosphere 995.0 90 > th dose dependent rect. 14 7
25 21.44 wind 1.0 270 > th dose independent rect. 7 6
26 21.44 temperature 10.0 270 > th dose independent rect. 7 7
28 21.44 atmosphere 995.0 270 > th dose independent rect. 7 7
29 21.44 atmosphere 1015.0 270 < th dose independent rect. 7 7
30 21.44 precipitation 0.1 270 < th dose independent rect. 18 9
31 21.44 atmosphere 1015.0 270 < th dose independent rect. 21 16
32 21.44 temperature 10.0 270 > th dose independent rect. 14 17
33 21.44 precipitation 0.1 270 < th dose dependent rect. 18 9
34 21.45 wind 1.0 270 > th dose independent rect. 18 9
37 21.46 wind 9.0 270 < th dose independent rect. 7 7
42 21.47 wind 9.0 270 < th dose independent rect. 3 15
45 21.48 precipitation 0.1 270 < th dose independent rect. 7 6
47 21.48 precipitation 0.1 270 < th dose dependent rect. 7 6
49 21.49 temperature 15.0 270 > th dose independent rect. 8 5
55 21.49 radiation 40.0 270 < th dose independent rect. 14 17
62 21.51 wind 9.0 270 < th dose independent rect. 8 5
67 21.52 temperature 10.0 270 > th dose independent rect. 18 9
68 21.52 humidity 50.0 270 > th dose independent rect. 18 9
69 21.52 radiation 20.0 270 < th dose independent rect. 18 9
72 21.52 temperature 10.0 270 > th dose independent rect. 3 15
73 21.52 atmosphere 1015.0 270 < th dose independent rect. 3 15
74 21.53 wind 9.0 270 < th dose independent rect. 18 9
78 21.53 radiation 20.0 270 < th dose dependent rect. 18 9
92 21.59 humidity 50.0 270 > th dose independent rect. 8 5
100 21.62 humidity 90.0 270 < th dose independent rect. 8 5
101 21.62 humidity 50.0 270 > th dose independent rect. 7 7
102 21.62 atmosphere 995.0 270 > th dose independent rect. 18 9
103 21.62 humidity 50.0 270 > th dose independent rect. 21 16
111 21.63 temperature 10.0 270 > th dose independent rect. 1 7
113 21.63 temperature 30.0 270 < th dose independent rect. 1 7
114 21.63 humidity 50.0 270 > th dose independent rect. 1 7
116 21.63 atmosphere 995.0 270 > th dose independent rect. 1 7
117 21.63 atmosphere 1015.0 270 < th dose independent rect. 1 7
119 21.63 temperature 10.0 270 > th dose independent rect. 8 17
123 21.63 atmosphere 995.0 10 > th dose dependent rect. 14 7
125 21.64 wind 9.0 270 < th dose independent rect. 1 7
127 21.64 radiation 40.0 270 < th dose independent rect. 1 7
129 21.64 atmosphere 1015.0 270 < th dose independent rect. 8 17
137 21.65 precipitation 0.1 270 < th dose independent rect. 3 15
138 21.65 precipitation 0.1 270 < th dose independent rect. 8 17
139 21.65 humidity 50.0 270 > th dose dependent rect. 1 7
140 21.65 precipitation 0.1 270 < th dose dependent rect. 3 15
141 21.65 precipitation 0.1 270 < th dose dependent rect. 8 17
149 21.67 precipitation 0.1 270 < th dose independent rect. 13 8
150 21.67 precipitation 0.1 270 < th dose dependent rect. 13 8
158 21.71 atmosphere 1015.0 270 < th dose independent rect. 13 8
160 21.73 precipitation 0.1 270 < th dose independent rect. 1 7
163 21.73 wind 9.0 270 < th dose independent rect. 8 17
164 21.73 precipitation 0.1 270 < th dose dependent rect. 1 7
165 21.73 radiation 40.0 270 < th dose dependent rect. 1 8
265 21.83 temperature 30.0 270 < th dose independent rect. 18 9
290 21.85 precipitation 0.1 270 < th dose independent rect. 13 18
291 21.85 precipitation 0.1 270 < th dose dependent rect. 13 18
297 21.86 wind 9.0 270 < th dose dependent rect. 1 7
358 21.92 wind 1.0 90 > th dose independent rect. 14 7
387 21.94 temperature 10.0 90 > th dose dependent rect. 21 17
394 21.95 radiation 1.0 270 > th dose independent rect. 13 18
407 21.96 humidity 90.0 270 < th dose independent rect. 21 16
444 22.00 atmosphere 995.0 10 > th dose independent rect. 16 16
462 22.02 radiation 40.0 90 < th dose independent rect. 14 7
464 22.02 atmosphere 1015.0 270 < th dose independent rect. 18 8
498 22.05 wind 9.0 10 < th dose independent rect. 14 7
520 22.05 wind 9.0 270 < th dose dependent rect. 8 5
522 22.05 temperature 10.0 270 > th dose dependent rect. 1 7
559 22.07 temperature 10.0 1440 > th dose independent rect. 15 7
575 22.07 temperature 10.0 1440 > th dose independent rect. 22 17
623 22.09 temperature 10.0 10 > th dose dependent rect. 10 4
663 22.12 atmosphere 995.0 10 > th dose independent rect. 14 20
667 22.13 humidity 50.0 270 > th dose independent rect. 9 2
689 22.13 atmosphere 1015.0 90 < th dose independent rect. 23 15
691 22.13 wind 9.0 10 < th dose independent rect. 16 16
715 22.14 temperature 10.0 10 > th dose independent rect. 8 8
719 22.14 atmosphere 1015.0 10 < th dose independent rect. 8 8
721 22.14 precipitation 0.1 10 < th dose independent rect. 8 8
730 22.14 temperature 10.0 10 > th dose independent rect. 16 16
734 22.14 radiation 40.0 10 < th dose independent rect. 16 16
745 22.14 precipitation 0.1 10 < th dose dependent rect. 8 8
785 22.16 temperature 10.0 10 > th dose dependent rect. 22 16
786 22.16 wind 9.0 270 < th dose dependent rect. 14 17
809 22.17 temperature 10.0 1440 > th dose independent rect. 9 8
815 22.17 temperature 10.0 1440 > th dose independent rect. 17 16
827 22.17 temperature 10.0 10 > th dose dependent rect. 8 8
835 22.18 wind 9.0 10 < th dose independent rect. 8 8
848 22.18 wind 9.0 270 < th dose dependent rect. 7 7
907 22.21 radiation 1.0 270 < th dose dependent sin 14 NA
922 22.22 humidity 50.0 10 > th dose independent rect. 16 16
943 22.23 wind 1.0 10 > th dose independent rect. 8 8