Os02g0696600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative plant transposon protein family protein.
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Os02g0696600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative plant transposon protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.43 | 0.272 | 13.8 | -0.122 | 0.714 | 0.449 | -0.287 | 0.266 | 0.479 | 22.9 | 29.28 | 257 | -- | -- |
| 33.47 | 0.269 | 13.8 | -0.0876 | 0.706 | 0.462 | -0.284 | -- | 0.491 | 22.8 | 29.13 | 253 | -- | -- |
| 33.78 | 0.271 | 13.8 | -0.104 | 0.716 | 0.455 | -- | 0.218 | 0.481 | 22.9 | 29.27 | 256 | -- | -- |
| 33.8 | 0.271 | 13.8 | -0.0791 | 0.713 | 0.47 | -- | -- | 0.487 | 22.9 | 29.2 | 256 | -- | -- |
| 59.91 | 0.36 | 13.7 | -0.0562 | -- | 0.493 | -- | -0.114 | 0.563 | -- | 28.1 | 93 | -- | -- |
| 39.87 | 0.296 | 13.8 | -0.165 | 0.761 | -- | -0.249 | -- | 0.457 | 0.0123 | -- | -- | -- | -- |
| 40.13 | 0.297 | 13.8 | -0.155 | 0.762 | -- | -- | -- | 0.458 | 0.042 | -- | -- | -- | -- |
| 57.66 | 0.354 | 13.7 | -0.0157 | -- | 0.46 | -- | -- | 0.544 | -- | 27.1 | 26 | -- | -- |
| 33.94 | 0.271 | 13.8 | -- | 0.716 | 0.484 | -- | -- | 0.502 | 22.8 | 29.11 | 276 | -- | -- |
| 76.72 | 0.409 | 13.7 | -0.132 | -- | -- | -- | -- | 0.469 | -- | -- | -- | -- | -- |
| 40.77 | 0.299 | 13.8 | -- | 0.76 | -- | -- | -- | 0.476 | 0.0305 | -- | -- | -- | -- |
| 57.67 | 0.354 | 13.7 | -- | -- | 0.464 | -- | -- | 0.542 | -- | 27.1 | 26 | -- | -- |
| 77.18 | 0.41 | 13.7 | -- | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.81 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
| 2 | 32.99 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 4 | 33.14 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 22 |
| 7 | 33.39 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 12 | 33.43 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 25 | 33.91 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 10 |
| 28 | 33.92 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 22 |
| 34 | 34.09 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 44 | 34.21 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 22 |
| 46 | 34.22 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 21 |
| 47 | 34.24 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 49 | 34.26 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 8 |
| 66 | 34.28 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 18 |
| 70 | 34.29 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 86 | 34.30 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 87 | 34.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 89 | 34.31 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 99 | 34.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 133 | 34.42 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 140 | 34.43 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 142 | 34.43 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 154 | 34.47 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 156 | 34.48 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 168 | 34.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 192 | 34.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 220 | 34.55 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 16 |
| 254 | 34.57 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 255 | 34.58 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 393 | 34.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 398 | 34.64 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 14 |
| 403 | 34.64 | humidity | 60 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 409 | 34.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 418 | 34.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 428 | 34.68 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 480 | 34.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 530 | 34.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 536 | 34.80 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 545 | 34.80 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 579 | 34.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 638 | 34.89 | humidity | 60 | 720 | < th | dose independent | rect. | 12 | 1 |
| 648 | 34.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 754 | 34.98 | humidity | 60 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 781 | 35.01 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 18 |
| 793 | 35.02 | radiation | 30 | 720 | < th | dose independent | rect. | 24 | 10 |
| 825 | 35.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 867 | 35.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 879 | 35.07 | humidity | 60 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 882 | 35.08 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 893 | 35.09 | temperature | 25 | 720 | > th | dose dependent | sin | 5 | NA |
| 910 | 35.11 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 913 | 35.11 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 925 | 35.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 12 |
| 949 | 35.14 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 996 | 35.17 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 12 |