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Os02g0695800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oligopeptide transporter 7 (AtOPT7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0303) R2 : 0.649
β1 : -0.0176 (0.117) R2dD : 3.59e-05 R2D : -0.0338
β2 : 1.27 (0.0654) R2dC : 0.296 R2C : 0.313
β3 : -1.2 (0.143) R2dE : 0.0796 R2E : 0.138
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.57 (0.491) R2dD*E : 0.192 R2D*E : 0.235
γ1 : 0.0614 (0.0616) R2dN8 : 0.000977 R2N8 : -0.0326
σ : 0.511
deviance : 120.59
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_____
C
peak time of C : 0.323
E
wheather : radiation
threshold : 89.24
memory length : 4333
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.6
open length of G : 4.27

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.17 0.513 10.3 -0.0504 1.26 -1.2 -0.693 -6.5 0.0546 0.418 86.36 4334 15.6 4.03
144.95 0.561 10.2 -0.478 1.2 -1.45 -1.26 -- -0.0467 0.245 98.44 18729 16.4 4.93
120.59 0.511 10.3 -0.0176 1.27 -1.2 -- -6.57 0.0614 0.323 89.24 4333 15.6 4.27
140.55 0.552 10.2 -0.0748 1.2 -1.54 -- -- -0.0487 0.513 101.2 18723 16.4 5.18
218.67 0.689 10.3 0.222 -- -1.7 -- -6.75 0.0287 -- 101.9 4330 15.8 3.9
188.98 0.644 10.1 -0.953 1.39 -- -0.379 -- 0.264 0.824 -- -- -- --
189.58 0.645 10.1 -0.939 1.39 -- -- -- 0.266 0.836 -- -- -- --
251.2 0.738 10.2 0.0219 -- -1.54 -- -- -0.0549 -- 99.22 18718 16.4 5.17
139.15 0.549 10.2 -- 1.23 -1.57 -- -- -0.0415 0.49 253.6 18720 16.6 4.57
310.24 0.823 10.1 -0.888 -- -- -- -- 0.292 -- -- -- -- --
212.82 0.682 10.1 -- 1.38 -- -- -- 0.371 0.806 -- -- -- --
245.08 0.729 10.2 -- -- -1.79 -- -- -0.0512 -- 104.3 18704 16.6 6.7
331.04 0.849 10.1 -- -- -- -- -- 0.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 124.54 radiation 40.0 4320 < th dose dependent rect. 15 4
2 124.56 radiation 40.0 4320 < th dose dependent rect. 15 6
10 124.62 radiation 20.0 4320 < th dose dependent rect. 16 2
12 124.62 radiation 40.0 4320 < th dose dependent rect. 15 11
14 124.63 radiation 40.0 4320 < th dose dependent rect. 15 13
52 125.09 radiation 1.0 4320 > th dose dependent rect. 15 3
89 125.56 radiation 10.0 4320 > th dose dependent rect. 15 16
128 126.69 wind 3.0 43200 > th dose dependent rect. 7 2
146 127.13 precipitation 0.1 43200 > th dose dependent rect. 1 17
150 127.42 precipitation 0.1 43200 > th dose dependent rect. 3 15
160 127.65 radiation 20.0 4320 < th dose independent rect. 15 4
161 127.66 radiation 20.0 4320 < th dose independent rect. 15 6
165 127.68 precipitation 0.1 43200 > th dose dependent rect. 5 13
168 127.71 radiation 20.0 4320 < th dose independent rect. 15 11
170 127.72 radiation 20.0 4320 < th dose independent rect. 15 13
212 128.27 radiation 20.0 4320 < th dose independent rect. 14 18
296 129.00 radiation 20.0 4320 < th dose independent sin 13 NA
300 129.06 radiation 20.0 4320 > th dose independent rect. 14 18
322 129.22 radiation 30.0 4320 < th dose dependent sin 13 NA
329 129.25 radiation 10.0 4320 > th dose independent rect. 15 16
361 129.48 radiation 10.0 4320 > th dose independent rect. 16 2
395 129.66 precipitation 0.1 43200 > th dose independent rect. 3 15
398 129.71 precipitation 0.1 43200 < th dose independent rect. 3 15
400 129.71 precipitation 0.1 43200 < th dose dependent rect. 3 15
418 129.80 precipitation 0.1 43200 > th dose dependent sin 1 NA
430 129.86 radiation 10.0 14400 > th dose independent rect. 14 4
444 129.92 radiation 1.0 4320 > th dose dependent sin 13 NA
462 130.06 precipitation 0.1 43200 > th dose dependent rect. 17 15
463 130.06 precipitation 0.1 43200 > th dose dependent rect. 15 17
486 130.17 precipitation 0.1 43200 > th dose independent rect. 5 13
489 130.20 precipitation 0.1 43200 < th dose independent rect. 5 13
490 130.20 precipitation 0.1 43200 < th dose dependent rect. 5 13
493 130.22 precipitation 0.1 43200 > th dose dependent rect. 13 19
526 130.37 radiation 10.0 14400 > th dose independent sin 15 NA
543 130.55 humidity 90.0 43200 > th dose dependent rect. 15 2
544 130.55 precipitation 0.1 43200 > th dose dependent rect. 19 23
564 130.78 humidity 90.0 43200 > th dose dependent rect. 14 5
578 130.79 precipitation 0.1 43200 > th dose independent rect. 3 18
579 130.79 precipitation 0.1 43200 < th dose independent rect. 3 18
582 130.79 precipitation 0.1 43200 < th dose dependent rect. 3 18
587 130.82 radiation 40.0 4320 < th dose independent rect. 14 5
610 130.88 radiation 40.0 4320 < th dose independent rect. 14 7
658 131.01 radiation 40.0 4320 < th dose independent rect. 14 12
659 131.01 radiation 40.0 4320 < th dose independent rect. 14 15
668 131.04 precipitation 0.1 43200 > th dose dependent rect. 7 2
674 131.07 radiation 10.0 14400 < th dose dependent rect. 13 6
683 131.09 radiation 10.0 14400 < th dose dependent rect. 13 12
720 131.19 precipitation 0.1 43200 > th dose independent rect. 7 2
750 131.26 precipitation 0.1 43200 < th dose independent rect. 7 2
751 131.26 precipitation 0.1 43200 < th dose dependent rect. 7 2
771 131.34 wind 9.0 43200 < th dose dependent rect. 8 1
788 131.44 precipitation 0.1 43200 > th dose independent rect. 23 19
791 131.45 precipitation 0.1 43200 > th dose dependent rect. 5 23
798 131.50 precipitation 0.1 43200 < th dose independent rect. 23 19
801 131.50 precipitation 0.1 43200 < th dose dependent rect. 23 19
802 131.51 precipitation 0.1 43200 < th dose independent rect. 5 16
803 131.51 precipitation 0.1 43200 > th dose dependent no NA NA
804 131.51 precipitation 0.1 43200 < th dose dependent rect. 5 16
805 131.52 precipitation 0.1 43200 > th dose independent rect. 13 5
806 131.52 precipitation 0.1 43200 > th dose independent rect. 5 16
828 131.57 radiation 10.0 14400 < th dose dependent sin 16 NA
830 131.58 precipitation 0.1 43200 < th dose independent rect. 13 5
832 131.58 precipitation 0.1 43200 < th dose dependent rect. 13 5
900 131.93 precipitation 0.1 43200 > th dose independent rect. 16 16
911 131.95 precipitation 0.1 43200 < th dose independent rect. 16 16
915 131.95 precipitation 0.1 43200 < th dose dependent rect. 16 16
917 131.96 humidity 90.0 43200 > th dose dependent rect. 9 9
940 132.07 wind 5.0 43200 < th dose independent rect. 5 4
1000 132.19 precipitation 0.1 43200 > th dose independent rect. 23 22