Os02g0694300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0694300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.06 | 0.39 | 9.26 | -0.94 | 0.329 | 0.831 | -0.529 | 1.18 | -0.0891 | 8.03 | 21 | 9123 | -- | -- |
| 69.67 | 0.389 | 9.31 | -1.24 | 0.322 | 0.807 | -0.596 | -- | -0.192 | 7.97 | 22.97 | 9090 | -- | -- |
| 69.81 | 0.389 | 9.27 | -0.939 | 0.338 | 0.786 | -- | 1.05 | -0.0925 | 8.53 | 22.27 | 9320 | -- | -- |
| 70.35 | 0.391 | 9.31 | -1.25 | 0.35 | 0.827 | -- | -- | -0.188 | 8.36 | 23.81 | 9342 | -- | -- |
| 75.06 | 0.404 | 9.27 | -0.898 | -- | 0.737 | -- | 1.07 | -0.0651 | -- | 22.59 | 8747 | -- | -- |
| 92.53 | 0.451 | 9.24 | -0.875 | 0.31 | -- | -0.574 | -- | 0.124 | 7.71 | -- | -- | -- | -- |
| 93.46 | 0.453 | 9.24 | -0.889 | 0.31 | -- | -- | -- | 0.125 | 7.83 | -- | -- | -- | -- |
| 75.83 | 0.406 | 9.31 | -1.25 | -- | 0.787 | -- | -- | -0.169 | -- | 23.77 | 8758 | -- | -- |
| 102.73 | 0.472 | 9.23 | -- | 0.355 | 0.562 | -- | -- | 0.0915 | 8.41 | 28.71 | 7991 | -- | -- |
| 98.66 | 0.464 | 9.25 | -0.886 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 114.31 | 0.5 | 9.22 | -- | 0.304 | -- | -- | -- | 0.224 | 8.04 | -- | -- | -- | -- |
| 107.39 | 0.483 | 9.24 | -- | -- | 0.486 | -- | -- | 0.146 | -- | 28.3 | 7304 | -- | -- |
| 119.35 | 0.51 | 9.23 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.43 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 3 | 69.48 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 5 | 69.51 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 6 | 69.53 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 12 | 69.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 18 | 69.67 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 20 | 69.70 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 26 | 69.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 28 | 69.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 33 | 69.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 35 | 69.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 39 | 69.79 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 184 | 70.15 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 237 | 70.25 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 280 | 70.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 391 | 70.54 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 454 | 70.62 | temperature | 25.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 462 | 70.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 549 | 70.73 | temperature | 25.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 681 | 70.85 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 718 | 70.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 723 | 70.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 753 | 70.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 822 | 70.95 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 966 | 71.03 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 15 | 17 |