Os02g0693800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0693800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.34 | 0.33 | 3.1 | 0.73 | 0.0841 | -0.351 | 0.346 | 1.93 | 0.244 | 11.5 | 25.85 | 5831 | -- | -- |
| 50.45 | 0.331 | 3.16 | 0.184 | 0.0757 | -0.162 | 0.394 | -- | 0.129 | 10.9 | 26.9 | 7244 | -- | -- |
| 48.22 | 0.323 | 3.07 | 1.12 | 0.0992 | -0.63 | -- | 4.39 | 0.198 | 12.4 | 29.36 | 5913 | -- | -- |
| 50.99 | 0.333 | 3.16 | 0.208 | 0.074 | -0.176 | -- | -- | 0.143 | 12.5 | 26.6 | 7254 | -- | -- |
| 49.07 | 0.326 | 3.06 | 1.15 | -- | -0.646 | -- | 4.49 | 0.196 | -- | 29.3 | 5865 | -- | -- |
| 51.76 | 0.337 | 3.17 | 0.127 | 0.0762 | -- | 0.389 | -- | 0.0947 | 11.4 | -- | -- | -- | -- |
| 52.35 | 0.339 | 3.17 | 0.144 | 0.0812 | -- | -- | -- | 0.097 | 13.1 | -- | -- | -- | -- |
| 51.06 | 0.333 | 3.16 | 0.192 | -- | -0.179 | -- | -- | 0.132 | -- | 33.05 | 7268 | -- | -- |
| 51.99 | 0.336 | 3.16 | -- | 0.0562 | -0.12 | -- | -- | 0.107 | 11.9 | 28.33 | 7199 | -- | -- |
| 52.76 | 0.339 | 3.17 | 0.141 | -- | -- | -- | -- | 0.0955 | -- | -- | -- | -- | -- |
| 52.9 | 0.34 | 3.17 | -- | 0.0788 | -- | -- | -- | 0.081 | 13 | -- | -- | -- | -- |
| 51.98 | 0.336 | 3.17 | -- | -- | -0.155 | -- | -- | 0.114 | -- | 32.9 | 7268 | -- | -- |
| 53.28 | 0.341 | 3.18 | -- | -- | -- | -- | -- | 0.0799 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 3 | 48.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 4 | 48.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 9 | 48.79 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 12 | 48.81 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 14 | 48.82 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 15 | 48.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 29 | 48.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 30 | 48.89 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 43 | 48.95 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 44 | 48.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 46 | 48.96 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 58 | 48.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 61 | 48.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 73 | 48.97 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 77 | 48.98 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 82 | 48.99 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 83 | 48.99 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 87 | 49.00 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 93 | 49.01 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 99 | 49.02 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 101 | 49.03 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 114 | 49.05 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 117 | 49.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 144 | 49.08 | humidity | 80 | 43200 | > th | dose dependent | rect. | 6 | 5 |
| 152 | 49.09 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 172 | 49.10 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 174 | 49.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 213 | 49.12 | wind | 7 | 43200 | < th | dose dependent | sin | 1 | NA |
| 222 | 49.13 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 225 | 49.13 | wind | 1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 227 | 49.13 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 318 | 49.16 | radiation | 10 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 359 | 49.17 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 447 | 49.20 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 448 | 49.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 450 | 49.20 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 462 | 49.20 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 494 | 49.21 | wind | 3 | 43200 | > th | dose independent | sin | 1 | NA |
| 512 | 49.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 516 | 49.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 550 | 49.21 | wind | 7 | 43200 | < th | dose dependent | rect. | 19 | 22 |
| 554 | 49.22 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 563 | 49.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 573 | 49.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 574 | 49.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 589 | 49.22 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 591 | 49.22 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 593 | 49.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 595 | 49.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 625 | 49.22 | wind | 7 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 628 | 49.22 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 634 | 49.23 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 636 | 49.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 637 | 49.23 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 687 | 49.23 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 697 | 49.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 698 | 49.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 703 | 49.23 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 738 | 49.23 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 17 |
| 748 | 49.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 21 |
| 768 | 49.24 | wind | 3 | 43200 | < th | dose independent | sin | 2 | NA |
| 772 | 49.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 803 | 49.24 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 16 |
| 809 | 49.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 888 | 49.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 914 | 49.25 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 14 |
| 923 | 49.25 | wind | 1 | 43200 | > th | dose dependent | no | NA | NA |
| 925 | 49.25 | wind | 7 | 43200 | < th | dose dependent | no | NA | NA |
| 927 | 49.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 944 | 49.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 1000 | 49.25 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |