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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0693700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to P-glycoprotein ABCB5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.0501) R2 : 0.428
β1 : -1.41 (0.199) R2dD : 0.0792 R2D : 0.148
β2 : 1.31 (0.124) R2dC : 0.142 R2C : 0.166
β3 : -1.86 (0.221) R2dE : 0.114 R2E : 0.188
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.221 (0.112) R2dN8 : 0.00727 R2N8 : 0.000726
σ : 0.924
deviance : 393.33
__
_____
C
peak time of C : 8.88
E
wheather : temperature
threshold : 19.4
memory length : 1093
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
380.17 0.916 3.98 -1.13 1.3 -1.35 -0.708 2.35 0.266 9.03 19.37 1050 -- --
389.42 0.919 4.03 -1.36 1.31 -1.84 -1 -- 0.227 9.07 19.4 1107 -- --
381.77 0.91 3.98 -1.13 1.3 -1.33 -- 2.53 0.27 8.94 19.39 1045 -- --
393.33 0.924 4.03 -1.41 1.31 -1.86 -- -- 0.221 8.88 19.4 1093 -- --
471.39 1.01 3.99 -0.948 -- -1.55 -- 2.68 0.371 -- 19.7 853 -- --
446.67 0.991 4.1 -2.04 1.41 -- -1.31 -- -0.0926 9.44 -- -- -- --
452.65 0.996 4.1 -2.1 1.42 -- -- -- -0.0963 9.24 -- -- -- --
478.78 1.02 4.06 -1.36 -- -2.1 -- -- 0.263 -- 19.31 733 -- --
438.19 0.975 4.03 -- 1.23 -2.4 -- -- 0.406 8.65 19.3 1094 -- --
569.68 1.12 4.14 -2.1 -- -- -- -- -0.0897 -- -- -- -- --
568.37 1.12 4.05 -- 1.42 -- -- -- 0.137 9.36 -- -- -- --
518.05 1.06 4 -- -- -2.65 -- -- 0.489 -- 19.3 844 -- --
686.11 1.22 4.09 -- -- -- -- -- 0.143 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 369.11 temperature 20.0 720 < th dose dependent rect. 3 2
3 370.87 radiation 1.0 14400 > th dose independent rect. 18 11
7 371.33 temperature 20.0 720 < th dose independent rect. 24 17
9 371.95 humidity 90.0 14400 > th dose dependent rect. 4 22
11 371.97 humidity 90.0 14400 > th dose dependent rect. 12 14
36 372.86 humidity 90.0 14400 > th dose dependent rect. 11 23
38 372.89 humidity 90.0 14400 > th dose dependent no NA NA
41 372.94 humidity 90.0 14400 > th dose dependent rect. 22 23
48 373.03 humidity 90.0 14400 > th dose dependent rect. 20 23
54 373.13 humidity 90.0 14400 > th dose dependent sin 16 NA
62 373.23 humidity 90.0 14400 > th dose dependent rect. 15 23
100 373.73 temperature 20.0 720 < th dose independent sin 5 NA
110 373.83 wind 9.0 43200 < th dose independent rect. 10 1
116 373.90 humidity 90.0 14400 > th dose dependent rect. 3 16
119 373.96 humidity 90.0 14400 > th dose dependent rect. 18 7
132 374.09 humidity 90.0 14400 > th dose independent rect. 18 6
134 374.11 wind 1.0 43200 > th dose dependent rect. 1 2
137 374.12 humidity 90.0 14400 > th dose dependent sin 2 NA
142 374.17 humidity 70.0 14400 > th dose dependent rect. 13 2
147 374.23 radiation 20.0 4320 > th dose dependent rect. 6 2
196 374.66 wind 9.0 43200 < th dose dependent rect. 1 2
202 374.73 temperature 20.0 720 < th dose dependent rect. 23 7
227 375.18 humidity 90.0 14400 > th dose dependent rect. 5 5
229 375.21 humidity 90.0 14400 > th dose independent rect. 9 19
230 375.21 humidity 90.0 14400 > th dose dependent rect. 21 3
256 375.44 humidity 90.0 14400 > th dose independent rect. 6 22
258 375.50 humidity 90.0 14400 > th dose independent sin 16 NA
261 375.52 humidity 90.0 14400 > th dose independent rect. 12 15
287 375.73 humidity 90.0 14400 > th dose independent rect. 11 17
291 375.76 wind 9.0 43200 > th dose independent rect. 10 1
302 375.82 humidity 90.0 14400 > th dose independent rect. 12 23
309 375.87 humidity 90.0 14400 > th dose independent rect. 17 23
312 375.89 humidity 90.0 14400 > th dose independent rect. 2 23
314 375.91 wind 1.0 43200 > th dose dependent rect. 23 6
334 376.03 humidity 90.0 14400 > th dose independent rect. 9 23
338 376.06 humidity 90.0 14400 > th dose independent no NA NA
344 376.08 humidity 90.0 14400 > th dose independent rect. 15 23
362 376.15 atmosphere 995.0 43200 < th dose dependent rect. 10 20
367 376.18 humidity 90.0 14400 > th dose independent rect. 20 23
378 376.22 humidity 90.0 14400 > th dose independent rect. 22 23
403 376.35 wind 9.0 43200 < th dose dependent rect. 23 6
413 376.40 atmosphere 995.0 43200 < th dose dependent rect. 15 20
504 376.84 atmosphere 995.0 43200 < th dose independent rect. 21 18
526 376.96 precipitation 0.1 43200 < th dose independent rect. 7 1
528 376.96 precipitation 0.1 43200 < th dose dependent rect. 7 1
531 376.97 atmosphere 995.0 43200 > th dose independent rect. 1 12
543 377.05 atmosphere 995.0 43200 > th dose independent rect. 23 15
553 377.09 atmosphere 995.0 43200 < th dose independent sin 6 NA
587 377.25 precipitation 0.1 43200 > th dose dependent rect. 7 1
601 377.35 precipitation 0.1 43200 > th dose independent rect. 7 1
626 377.47 atmosphere 995.0 43200 > th dose independent rect. 18 20
655 377.64 humidity 80.0 14400 > th dose independent rect. 13 3
660 377.67 humidity 80.0 14400 > th dose independent rect. 10 9
704 377.91 humidity 80.0 14400 > th dose dependent rect. 12 9
717 377.97 atmosphere 995.0 43200 < th dose dependent sin 8 NA
725 378.00 atmosphere 995.0 43200 < th dose dependent rect. 21 14
750 378.14 humidity 90.0 14400 > th dose independent rect. 20 1
785 378.29 atmosphere 995.0 43200 < th dose dependent rect. 21 20
790 378.30 atmosphere 995.0 43200 < th dose dependent rect. 17 23
805 378.36 atmosphere 995.0 43200 < th dose independent rect. 2 10
820 378.38 atmosphere 995.0 43200 < th dose dependent no NA NA
829 378.40 atmosphere 995.0 43200 > th dose independent sin 6 NA
869 378.55 humidity 80.0 14400 < th dose independent rect. 10 9
873 378.56 wind 7.0 43200 > th dose dependent rect. 10 1
891 378.63 temperature 20.0 720 > th dose independent rect. 23 18
912 378.72 humidity 80.0 14400 > th dose independent rect. 11 5
917 378.73 radiation 20.0 4320 > th dose independent rect. 6 2
945 378.78 humidity 90.0 43200 > th dose dependent rect. 9 4
990 378.89 atmosphere 995.0 43200 < th dose dependent rect. 1 23
991 378.90 humidity 90.0 14400 > th dose independent sin 4 NA
994 378.91 humidity 90.0 14400 < th dose independent rect. 9 16