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Os02g0693200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chaperone protein dnaJ.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0219) R2 : 0.705
β1 : -1.15 (0.0802) R2dD : 0.138 R2D : 0.0994
β2 : 1.57 (0.0522) R2dC : 0.584 R2C : 0.564
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.231 (0.0468) R2dN8 : 0.0211 R2N8 : -0.0057
σ : 0.412
deviance : 77.33
__
_____
C
peak time of C : 0.982
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.95 0.361 10.6 -1.13 1.55 0.926 -0.907 0.597 -0.059 1.05 1.506 5799 -- --
59.38 0.359 10.6 -1.01 1.55 0.875 -0.929 -- -0.0584 1.06 1.51 5806 -- --
62.34 0.368 10.6 -1.08 1.55 0.931 -- 0.51 -0.0587 1.03 1.51 5806 -- --
62.67 0.369 10.6 -0.971 1.54 0.878 -- -- -0.0605 1.04 1.508 5806 -- --
92.92 0.451 10.6 -1.09 -- 1.09 -- -0.82 -0.15 -- 2.089 4692 -- --
73.47 0.402 10.7 -1.18 1.57 -- -0.961 -- -0.236 1.01 -- -- -- --
77.33 0.412 10.7 -1.15 1.57 -- -- -- -0.231 0.982 -- -- -- --
97.31 0.461 10.6 -1.09 -- 1.09 -- -- -0.153 -- 2.089 4692 -- --
69.27 0.388 10.6 -- 1.6 0.994 -- -- 0.108 1.11 0.000174 40361 -- --
230.02 0.709 10.7 -1.09 -- -- -- -- -0.201 -- -- -- -- --
112.16 0.495 10.6 -- 1.55 -- -- -- -0.103 0.95 -- -- -- --
121.42 0.515 10.6 -- -- 1.12 -- -- -0.0908 -- 0.299 46490 -- --
261.41 0.755 10.6 -- -- -- -- -- -0.0796 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.27 humidity 70.0 14400 < th dose dependent rect. 18 14
2 56.39 radiation 20.0 4320 < th dose independent rect. 19 13
5 56.42 radiation 20.0 4320 < th dose independent rect. 5 3
6 56.42 humidity 70.0 14400 < th dose dependent rect. 17 4
13 56.43 radiation 20.0 4320 < th dose independent rect. 22 10
39 56.57 radiation 20.0 1440 < th dose dependent rect. 18 3
43 56.82 radiation 1.0 1440 < th dose dependent rect. 18 11
44 56.83 radiation 1.0 1440 < th dose dependent rect. 18 3
45 56.86 humidity 80.0 43200 < th dose independent rect. 4 2
55 57.00 humidity 60.0 14400 > th dose independent rect. 17 3
57 57.03 humidity 60.0 14400 < th dose independent rect. 17 3
60 57.05 temperature 20.0 30 > th dose dependent rect. 20 22
61 57.06 wind 3.0 43200 < th dose independent rect. 2 2
91 57.16 humidity 60.0 14400 < th dose dependent rect. 16 17
93 57.22 wind 3.0 43200 > th dose independent rect. 2 2
106 57.39 humidity 80.0 43200 > th dose independent rect. 3 2
123 57.44 wind 5.0 43200 < th dose dependent rect. 24 4
126 57.49 humidity 80.0 43200 < th dose independent rect. 22 8
127 57.49 wind 1.0 43200 < th dose dependent rect. 9 21
162 57.62 wind 3.0 43200 > th dose independent rect. 2 5
163 57.62 humidity 70.0 1440 > th dose dependent rect. 7 5
169 57.67 wind 3.0 43200 < th dose independent rect. 2 5
170 57.67 humidity 80.0 1440 < th dose independent rect. 7 5
171 57.67 radiation 1.0 14400 < th dose independent rect. 18 11
178 57.73 radiation 1.0 14400 < th dose independent rect. 18 3
202 57.79 wind 1.0 43200 < th dose dependent rect. 11 18
214 57.84 humidity 80.0 1440 > th dose independent rect. 7 5
217 57.86 humidity 80.0 43200 < th dose independent rect. 22 1
220 57.88 humidity 80.0 43200 > th dose independent rect. 23 7
228 57.91 wind 3.0 43200 < th dose independent rect. 24 7
231 57.91 radiation 1.0 1440 < th dose dependent rect. 18 18
233 57.92 wind 3.0 43200 > th dose independent rect. 2 12
251 57.96 wind 3.0 43200 > th dose independent rect. 24 7
252 57.96 humidity 80.0 43200 < th dose dependent rect. 22 1
265 57.99 wind 3.0 43200 < th dose independent rect. 2 11
266 57.99 radiation 1.0 14400 > th dose dependent rect. 18 1
301 58.04 wind 3.0 43200 > th dose dependent rect. 5 2
330 58.12 humidity 80.0 43200 < th dose dependent rect. 22 9
370 58.20 wind 3.0 43200 > th dose independent rect. 2 8
374 58.20 wind 9.0 43200 < th dose dependent rect. 12 1
377 58.21 humidity 70.0 14400 > th dose independent rect. 19 13
379 58.21 wind 9.0 43200 < th dose dependent rect. 24 15
383 58.22 wind 3.0 43200 < th dose independent rect. 21 10
390 58.25 radiation 1.0 14400 > th dose independent rect. 18 1
414 58.26 wind 5.0 43200 < th dose dependent rect. 24 14
417 58.27 wind 3.0 43200 > th dose independent sin 6 NA
426 58.27 precipitation 0.1 14400 > th dose dependent rect. 5 3
433 58.28 wind 3.0 43200 > th dose independent rect. 20 11
434 58.28 wind 3.0 43200 > th dose independent rect. 20 17
441 58.29 wind 1.0 43200 > th dose dependent rect. 12 1
443 58.29 wind 9.0 43200 < th dose dependent rect. 3 12
456 58.31 wind 3.0 43200 < th dose independent sin 7 NA
457 58.31 wind 7.0 43200 > th dose independent rect. 15 1
462 58.31 radiation 40.0 14400 < th dose dependent rect. 18 11
465 58.31 wind 5.0 43200 < th dose dependent rect. 20 17
468 58.32 wind 3.0 43200 < th dose independent rect. 21 16
471 58.32 wind 1.0 43200 > th dose dependent rect. 24 7
473 58.32 wind 1.0 43200 > th dose dependent rect. 24 15
479 58.33 wind 5.0 43200 < th dose dependent rect. 3 11
496 58.35 wind 5.0 43200 < th dose dependent rect. 20 11
538 58.39 wind 5.0 43200 < th dose dependent rect. 9 4
540 58.39 wind 5.0 43200 < th dose dependent rect. 20 9
546 58.40 wind 3.0 43200 < th dose independent rect. 21 13
547 58.40 wind 3.0 43200 > th dose independent rect. 20 14
564 58.41 wind 1.0 43200 > th dose dependent rect. 3 12
585 58.43 wind 9.0 43200 < th dose dependent sin 4 NA
586 58.43 humidity 80.0 43200 < th dose dependent rect. 5 1
587 58.43 wind 9.0 43200 < th dose dependent rect. 24 7
591 58.44 humidity 80.0 43200 > th dose independent rect. 23 1
592 58.44 atmosphere 1005.0 43200 < th dose independent rect. 18 1
616 58.46 atmosphere 1005.0 43200 > th dose independent rect. 16 1
627 58.47 wind 7.0 43200 < th dose independent rect. 15 1
664 58.49 wind 5.0 43200 > th dose dependent rect. 15 1
672 58.50 atmosphere 1005.0 43200 > th dose independent rect. 18 2
677 58.50 radiation 1.0 14400 < th dose dependent rect. 18 8
693 58.51 radiation 1.0 14400 < th dose dependent rect. 18 6
716 58.53 atmosphere 1005.0 43200 < th dose independent rect. 10 9
728 58.54 wind 1.0 43200 > th dose dependent sin 4 NA
730 58.54 wind 1.0 43200 > th dose dependent rect. 3 4
739 58.55 precipitation 0.1 14400 > th dose independent rect. 5 3
750 58.55 temperature 20.0 10 > th dose dependent rect. 5 22
773 58.58 atmosphere 1005.0 43200 > th dose independent rect. 16 4
790 58.59 wind 3.0 43200 > th dose independent rect. 9 4
795 58.59 wind 1.0 43200 > th dose dependent rect. 24 4
799 58.59 humidity 70.0 10 > th dose dependent rect. 7 13
801 58.60 atmosphere 1005.0 43200 < th dose independent rect. 16 1
804 58.60 humidity 80.0 43200 < th dose dependent rect. 3 3
947 58.69 precipitation 0.1 14400 < th dose independent rect. 5 2
952 58.69 atmosphere 1005.0 43200 > th dose independent rect. 10 10
954 58.69 precipitation 0.1 14400 < th dose dependent rect. 5 2
990 58.72 atmosphere 1005.0 43200 < th dose independent rect. 13 6