Os02g0691800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0691800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.44 | 0.287 | 8.1 | -1.1 | 0.301 | 0.179 | -0.0056 | -0.833 | -0.155 | 5.14 | 20.8 | 3141 | -- | -- |
| 38.48 | 0.289 | 8.07 | -0.98 | 0.304 | 0.308 | -0.0337 | -- | -0.131 | 5.12 | 21 | 6364 | -- | -- |
| 37.44 | 0.285 | 8.1 | -1.1 | 0.301 | 0.179 | -- | -0.833 | -0.155 | 5.14 | 20.8 | 3143 | -- | -- |
| 38.39 | 0.289 | 8.06 | -0.918 | 0.305 | 0.288 | -- | -- | -0.123 | 5 | 21.4 | 2132 | -- | -- |
| 42.12 | 0.302 | 8.1 | -1.1 | -- | 0.212 | -- | -0.789 | -0.152 | -- | 20.9 | 2889 | -- | -- |
| 40.44 | 0.298 | 8.05 | -0.766 | 0.307 | -- | -0.0305 | -- | -0.0303 | 5.09 | -- | -- | -- | -- |
| 40.44 | 0.298 | 8.05 | -0.766 | 0.307 | -- | -- | -- | -0.0301 | 5.07 | -- | -- | -- | -- |
| 42.96 | 0.305 | 8.07 | -0.896 | -- | 0.294 | -- | -- | -0.115 | -- | 21.3 | 2649 | -- | -- |
| 46.44 | 0.317 | 8.01 | -- | 0.312 | -0.549 | -- | -- | 0.183 | 5.08 | 19.5 | 47520 | -- | -- |
| 45.38 | 0.315 | 8.05 | -0.755 | -- | -- | -- | -- | -0.0223 | -- | -- | -- | -- | -- |
| 55.92 | 0.35 | 8.03 | -- | 0.293 | -- | -- | -- | 0.0552 | 5.16 | -- | -- | -- | -- |
| 50.18 | 0.33 | 7.99 | -- | -- | -0.469 | -- | -- | 0.225 | -- | 22.07 | 47520 | -- | -- |
| 60.43 | 0.363 | 8.03 | -- | -- | -- | -- | -- | 0.0615 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 2 | 35.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 3 | 35.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 4 | 35.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 5 | 36.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 6 | 36.09 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 8 | 36.13 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 10 | 36.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 11 | 36.14 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 34 | 36.23 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 47 | 36.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 57 | 36.31 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 58 | 36.32 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 73 | 36.37 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 83 | 36.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 87 | 36.41 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 95 | 36.45 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 102 | 36.47 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 115 | 36.49 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 133 | 36.55 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 138 | 36.56 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 143 | 36.58 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 159 | 36.61 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 163 | 36.62 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 170 | 36.63 | wind | 9.0 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 218 | 36.71 | wind | 3.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 234 | 36.73 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 249 | 36.75 | wind | 9.0 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 255 | 36.76 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 298 | 36.82 | wind | 3.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 329 | 36.85 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 339 | 36.85 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 358 | 36.87 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 442 | 36.94 | temperature | 25.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 443 | 36.94 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 476 | 36.96 | temperature | 25.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 486 | 36.96 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 501 | 36.97 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 508 | 36.98 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 520 | 36.98 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 544 | 36.99 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 545 | 36.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 553 | 37.00 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 554 | 37.00 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 588 | 37.01 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 612 | 37.02 | wind | 9.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 621 | 37.02 | wind | 3.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 622 | 37.02 | wind | 3.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 637 | 37.03 | wind | 9.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 652 | 37.03 | wind | 9.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 656 | 37.03 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 669 | 37.04 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 696 | 37.04 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 729 | 37.05 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 741 | 37.05 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 771 | 37.06 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 777 | 37.06 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 815 | 37.07 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 961 | 37.10 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 12 |