Os02g0690500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TA11 protein (Fragment).
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Os02g0690500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TA11 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.7 | 0.229 | 10.2 | 1.23 | 0.323 | 0.518 | 0.348 | -0.209 | 0.295 | 9.02 | 24.6 | 14 | -- | -- |
| 23.74 | 0.229 | 10.2 | 1.2 | 0.326 | 0.538 | 0.396 | -- | 0.291 | 9.12 | 24.6 | 14 | -- | -- |
| 24.02 | 0.23 | 10.2 | 1.26 | 0.325 | 0.501 | -- | -0.364 | 0.299 | 8.86 | 24.6 | 6 | -- | -- |
| 24.25 | 0.231 | 10.2 | 1.21 | 0.327 | 0.533 | -- | -- | 0.289 | 8.92 | 24.6 | 6 | -- | -- |
| 29.21 | 0.252 | 10.2 | 1.34 | -- | 0.415 | -- | -0.613 | 0.314 | -- | 28.41 | 426 | -- | -- |
| 28.06 | 0.248 | 10.2 | 1.08 | 0.292 | -- | 0.366 | -- | 0.193 | 8.07 | -- | -- | -- | -- |
| 28.43 | 0.25 | 10.2 | 1.09 | 0.295 | -- | -- | -- | 0.192 | 7.77 | -- | -- | -- | -- |
| 28.63 | 0.249 | 10.2 | 1.22 | -- | 0.541 | -- | -- | 0.275 | -- | 38.41 | 563 | -- | -- |
| 39.56 | 0.293 | 10.3 | -- | 0.365 | -0.732 | -- | -- | -0.146 | 8.09 | 24.35 | 47520 | -- | -- |
| 33.14 | 0.269 | 10.2 | 1.09 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 59.74 | 0.362 | 10.3 | -- | 0.304 | -- | -- | -- | 0.0708 | 7.52 | -- | -- | -- | -- |
| 43.49 | 0.307 | 10.3 | -- | -- | -0.74 | -- | -- | -0.146 | -- | 51.84 | 47520 | -- | -- |
| 64.67 | 0.375 | 10.3 | -- | -- | -- | -- | -- | 0.075 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 12 |
| 2 | 21.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 11 | 21.69 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 12 | 21.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 14 | 21.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 19 | 21.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 26 | 21.97 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 19 |
| 30 | 22.00 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 8 |
| 50 | 22.14 | temperature | 20 | 270 | > th | dose dependent | sin | 14 | NA |
| 51 | 22.15 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 52 | 22.15 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 15 |
| 55 | 22.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 80 | 22.24 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 14 |
| 81 | 22.24 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 86 | 22.27 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 119 | 22.36 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 156 | 22.45 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 182 | 22.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 188 | 22.53 | temperature | 10 | 270 | > th | dose dependent | sin | 14 | NA |
| 201 | 22.57 | temperature | 30 | 90 | < th | dose dependent | sin | 13 | NA |
| 205 | 22.59 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 15 |
| 394 | 22.96 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 399 | 22.96 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 480 | 23.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 538 | 23.11 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 21 |
| 544 | 23.12 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 10 |
| 745 | 23.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 920 | 23.50 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 927 | 23.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 12 |