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Os02g0689900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.85 (0.0511) R2 : 0.823
β1 : 3.88 (0.189) R2dD : 0.175 R2D : 0.0709
β2 : 4.95 (0.126) R2dC : 0.601 R2C : 0.585
β3 : -3.07 (0.278) R2dE : 0.0497 R2E : -0.00113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.23 (0.109) R2dN8 : 0.0669 R2N8 : 0.0295
σ : 0.952
deviance : 417.61
__
_____
C
peak time of C : 8.95
E
wheather : atmosphere
threshold : 1002
memory length : 81
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
401.62 0.942 9.92 3.29 4.93 -0.495 0.849 -13.3 1.28 8.92 1004 94 -- --
418.85 0.961 9.85 3.83 4.97 -2.89 0.786 -- 1.22 8.95 1003 81 -- --
404.01 0.936 9.92 3.32 4.93 -0.513 -- -13.3 1.28 8.91 1004 96 -- --
417.61 0.952 9.85 3.88 4.95 -3.07 -- -- 1.23 8.95 1002 81 -- --
1793.41 1.97 10.1 3.27 -- -0.406 -- -14.6 1.32 -- 1004 126 -- --
526.82 1.08 9.81 3.53 4.97 -- 0.853 -- 1.37 8.91 -- -- -- --
529.29 1.08 9.81 3.56 4.96 -- -- -- 1.37 8.9 -- -- -- --
1790.78 1.97 10.1 3.86 -- -3.03 -- -- 0.825 -- 1010 436 -- --
805.04 1.33 9.93 -- 4.97 -2.12 -- -- 0.84 8.88 1003 36 -- --
1936.47 2.06 9.95 3.56 -- -- -- -- 1.41 -- -- -- -- --
863.79 1.37 9.9 -- 4.97 -- -- -- 0.975 8.85 -- -- -- --
2162.22 2.17 10.2 -- -- -2.48 -- -- 0.521 -- 1010 408 -- --
2271.11 2.22 10 -- -- -- -- -- 1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 377.35 humidity 80 14400 < th dose dependent rect. 19 10
8 382.96 humidity 80 14400 < th dose dependent rect. 20 3
10 385.11 wind 1 43200 > th dose independent rect. 10 1
12 385.36 humidity 80 14400 > th dose independent rect. 19 10
18 387.12 wind 1 43200 < th dose independent rect. 10 1
20 389.28 humidity 80 14400 < th dose independent rect. 19 10
35 392.21 humidity 80 14400 < th dose independent rect. 18 13
37 392.58 humidity 80 14400 > th dose independent sin 11 NA
39 392.70 radiation 10 14400 < th dose independent rect. 6 1
45 393.51 humidity 80 14400 < th dose independent rect. 20 5
49 394.00 radiation 10 14400 > th dose independent rect. 6 1
51 394.14 humidity 80 14400 < th dose independent sin 11 NA
90 398.40 radiation 20 14400 > th dose independent rect. 8 1
91 398.56 wind 1 43200 < th dose dependent rect. 10 1
94 398.80 radiation 20 14400 < th dose independent rect. 8 1
102 399.91 atmosphere 1000 90 > th dose independent rect. 17 23
109 400.68 radiation 20 14400 < th dose independent rect. 17 16
110 400.83 radiation 20 14400 < th dose independent rect. 5 4
113 400.84 atmosphere 1000 90 < th dose independent rect. 7 22
114 400.87 radiation 20 14400 < th dose independent rect. 19 14
133 401.80 humidity 80 14400 < th dose independent rect. 21 1
134 402.04 radiation 20 14400 > th dose independent rect. 17 16
154 402.55 humidity 80 14400 > th dose independent rect. 21 1
171 404.05 radiation 40 14400 > th dose independent rect. 10 1
172 404.19 atmosphere 1000 90 < th dose independent rect. 11 23
175 404.49 atmosphere 1000 90 < th dose independent rect. 13 22
182 404.84 radiation 40 14400 < th dose independent rect. 10 1
193 405.49 radiation 20 14400 > th dose dependent rect. 8 1
198 405.72 atmosphere 1005 270 < th dose dependent rect. 5 22
204 405.89 atmosphere 1005 90 < th dose dependent rect. 7 22
214 406.30 temperature 30 14400 < th dose independent rect. 5 5
217 406.33 temperature 30 14400 < th dose independent rect. 19 15
220 406.39 atmosphere 1000 90 < th dose independent rect. 3 23
222 406.41 atmosphere 1000 90 < th dose independent no NA NA
229 406.47 radiation 10 14400 > th dose dependent rect. 6 1
253 406.71 wind 9 14400 > th dose dependent rect. 13 2
254 406.74 atmosphere 1000 90 > th dose independent no NA NA
255 406.77 atmosphere 1000 90 < th dose independent rect. 21 23
256 406.84 atmosphere 1005 90 < th dose dependent rect. 13 23
261 407.26 wind 9 14400 > th dose independent rect. 13 2
269 407.76 atmosphere 1005 90 < th dose dependent rect. 11 23
283 408.29 atmosphere 1000 90 < th dose independent rect. 19 23
292 408.42 atmosphere 1000 10 < th dose independent rect. 14 22
303 408.58 temperature 30 14400 > th dose independent rect. 8 2
321 408.77 radiation 40 14400 > th dose dependent rect. 10 1
324 408.82 atmosphere 1005 90 < th dose dependent no NA NA
335 409.14 atmosphere 1000 720 > th dose independent rect. 10 20
340 409.25 atmosphere 1000 90 > th dose independent rect. 10 23
341 409.27 atmosphere 1005 90 < th dose dependent rect. 19 23
362 409.45 radiation 30 14400 < th dose dependent rect. 8 1
384 409.73 temperature 30 4320 < th dose independent rect. 10 3
398 410.02 atmosphere 1005 90 < th dose dependent rect. 21 23
405 410.15 wind 9 14400 < th dose independent rect. 13 2
407 410.16 atmosphere 1000 90 < th dose independent rect. 23 23
411 410.23 atmosphere 1005 30 < th dose dependent rect. 1 23
427 410.33 atmosphere 1005 30 < th dose dependent rect. 23 23
433 410.40 atmosphere 1000 90 < th dose independent rect. 17 23
443 410.53 atmosphere 1000 90 > th dose independent rect. 3 23
453 410.70 radiation 40 14400 > th dose dependent rect. 10 3
455 410.74 atmosphere 1000 90 < th dose independent rect. 1 23
457 410.77 atmosphere 1005 30 < th dose dependent rect. 17 23
477 410.86 atmosphere 1005 270 < th dose dependent rect. 17 23
525 411.44 radiation 40 14400 > th dose dependent rect. 12 1
550 411.60 wind 1 43200 < th dose independent rect. 2 4
575 411.76 temperature 30 4320 < th dose independent rect. 19 18
582 411.80 temperature 30 4320 < th dose independent rect. 22 15
593 411.86 temperature 30 4320 > th dose independent rect. 10 3
596 411.87 temperature 30 4320 < th dose independent rect. 1 12
604 411.90 temperature 30 4320 < th dose independent rect. 3 10
621 412.03 humidity 80 43200 > th dose independent rect. 17 5
652 412.44 radiation 40 14400 < th dose independent rect. 5 6
658 412.48 radiation 40 14400 < th dose independent rect. 20 15
663 412.50 radiation 40 14400 < th dose independent rect. 16 19
699 412.86 atmosphere 1000 10 > th dose independent no NA NA
706 412.95 atmosphere 1000 720 > th dose independent rect. 10 12
707 412.96 atmosphere 1000 90 > th dose independent rect. 1 23
714 413.09 wind 1 43200 < th dose dependent rect. 2 3
716 413.13 temperature 30 14400 > th dose dependent rect. 8 2
768 413.57 atmosphere 1000 720 > th dose independent rect. 3 19
840 414.23 humidity 80 43200 < th dose independent rect. 17 5
892 414.69 atmosphere 1000 720 < th dose independent rect. 9 17
895 414.71 humidity 70 43200 < th dose dependent rect. 15 1
905 414.84 humidity 70 43200 < th dose dependent rect. 14 3
989 415.23 humidity 70 43200 > th dose dependent rect. 19 1