Os02g0687500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0687500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.33 | 0.34 | 9.54 | 1.07 | 0.792 | 1.55 | 0.422 | 1.09 | 0.184 | 11.3 | 24.6 | 312 | -- | -- |
| 54.2 | 0.343 | 9.52 | 1.18 | 0.731 | 1.52 | 0.412 | -- | 0.234 | 11.5 | 25.26 | 386 | -- | -- |
| 52.96 | 0.339 | 9.54 | 1.09 | 0.757 | 1.56 | -- | 1.06 | 0.189 | 11.3 | 24.66 | 350 | -- | -- |
| 54.33 | 0.343 | 9.52 | 1.28 | 0.764 | 1.45 | -- | -- | 0.227 | 11.4 | 25 | 352 | -- | -- |
| 73.14 | 0.398 | 9.55 | 1.13 | -- | 1.69 | -- | 1.03 | 0.246 | -- | 28.1 | 755 | -- | -- |
| 83.47 | 0.428 | 9.58 | 0.875 | 0.771 | -- | 0.375 | -- | -0.0567 | 10.4 | -- | -- | -- | -- |
| 84.04 | 0.429 | 9.58 | 0.89 | 0.769 | -- | -- | -- | -0.0556 | 10.4 | -- | -- | -- | -- |
| 73.83 | 0.4 | 9.53 | 1.34 | -- | 1.68 | -- | -- | 0.27 | -- | 30.07 | 799 | -- | -- |
| 93.11 | 0.449 | 9.53 | -- | 0.874 | 1.06 | -- | -- | 0.039 | 10.9 | 24.7 | 315 | -- | -- |
| 120.23 | 0.512 | 9.6 | 0.877 | -- | -- | -- | -- | -0.0585 | -- | -- | -- | -- | -- |
| 104.94 | 0.479 | 9.6 | -- | 0.763 | -- | -- | -- | -0.155 | 10.4 | -- | -- | -- | -- |
| 115.95 | 0.502 | 9.59 | -- | -- | 1.17 | -- | -- | 0.0146 | -- | 31.33 | 760 | -- | -- |
| 140.53 | 0.553 | 9.62 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 83 | 52.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 84 | 52.97 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 87 | 53.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 89 | 53.05 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 93 | 53.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 110 | 53.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 119 | 53.57 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 120 | 53.58 | temperature | 15 | 720 | > th | dose dependent | sin | 13 | NA |
| 130 | 53.68 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 134 | 53.77 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 159 | 54.02 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 227 | 54.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 328 | 55.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 348 | 55.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 383 | 55.66 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 7 |
| 537 | 56.56 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 5 |
| 601 | 56.85 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 649 | 57.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 666 | 57.29 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 16 |
| 682 | 57.34 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 17 |
| 811 | 57.88 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 12 |
| 990 | 58.59 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 16 |