Os02g0686500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0686500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.95 | 0.304 | 7.91 | 0.455 | 1.31 | -1.47 | -0.917 | -2.01 | 0.258 | 3.54 | 15.2 | 37 | -- | -- |
| 44.53 | 0.311 | 7.88 | 0.746 | 1.32 | -1.52 | -0.363 | -- | 0.335 | 3.51 | 13.43 | 57 | -- | -- |
| 43.88 | 0.309 | 7.9 | 0.571 | 1.33 | -1.49 | -- | -1.19 | 0.289 | 3.54 | 11.25 | 37 | -- | -- |
| 44.93 | 0.312 | 7.88 | 0.752 | 1.33 | -1.5 | -- | -- | 0.335 | 3.5 | 8.8 | 60 | -- | -- |
| 108.24 | 0.485 | 7.83 | 0.997 | -- | -2.4 | -- | -0.345 | 0.54 | -- | 19 | 75 | -- | -- |
| 66.86 | 0.383 | 7.93 | 0.447 | 1.75 | -- | -0.097 | -- | 0.124 | 3.34 | -- | -- | -- | -- |
| 66.89 | 0.383 | 7.92 | 0.448 | 1.75 | -- | -- | -- | 0.124 | 3.34 | -- | -- | -- | -- |
| 108.34 | 0.485 | 7.84 | 1.03 | -- | -2.4 | -- | -- | 0.56 | -- | 19.16 | 75 | -- | -- |
| 58.21 | 0.357 | 7.9 | -- | 1.45 | -1.15 | -- | -- | 0.211 | 3.58 | 9.79 | 56 | -- | -- |
| 239.21 | 0.723 | 7.92 | 0.522 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 72.19 | 0.397 | 7.94 | -- | 1.76 | -- | -- | -- | 0.0743 | 3.34 | -- | -- | -- | -- |
| 133.98 | 0.539 | 7.87 | -- | -- | -2.1 | -- | -- | 0.406 | -- | 20.47 | 73 | -- | -- |
| 246.41 | 0.733 | 7.94 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.49 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 39.70 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 37 | 41.83 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 41 | 41.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 43 | 42.00 | temperature | 15.0 | 30 | > th | dose dependent | no | NA | NA |
| 50 | 42.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 61 | 42.33 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 71 | 42.61 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 78 | 42.76 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 100 | 43.12 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 111 | 43.25 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 113 | 43.28 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 120 | 43.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 134 | 43.57 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 152 | 43.90 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 165 | 44.06 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 208 | 44.54 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 227 | 44.70 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 243 | 44.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 266 | 45.04 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 315 | 45.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 449 | 46.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 455 | 46.47 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 597 | 47.48 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 617 | 47.65 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 686 | 48.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 704 | 48.24 | temperature | 30.0 | 30 | < th | dose dependent | sin | 22 | NA |
| 768 | 48.54 | temperature | 10.0 | 30 | > th | dose dependent | sin | 21 | NA |
| 859 | 49.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 879 | 49.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 21 |