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Os02g0685900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium dependent protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0181) R2 : 0.881
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.51 (0.0433) R2dC : 0.884 R2C : 0.88
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0344 (0.0381) R2dN8 : 0.000274 R2N8 : -0.00284
σ : 0.342
deviance : 53.35
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_____
C
peak time of C : 23.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.99 0.27 12.1 0.465 1.6 0.831 0.0291 -0.834 0.148 22.8 10.9 27 -- --
33.24 0.269 12.1 0.441 1.63 0.789 -0.802 -- 0.146 22.9 8.342 13 -- --
32.89 0.267 12.1 0.47 1.59 0.815 -- -0.778 0.152 22.8 8.489 26 -- --
36.27 0.28 12.1 0.482 1.61 0.795 -- -- 0.145 22.9 8.376 14 -- --
63.52 0.371 12.1 0.461 -- 1.94 -- -0.869 0.191 -- 8.154 11 -- --
44.15 0.311 12.2 0.452 2.5 -- -0.836 -- 0.0855 23.2 -- -- -- --
47.14 0.322 12.2 0.486 2.51 -- -- -- 0.0885 23.2 -- -- -- --
68.11 0.384 12.1 0.478 -- 1.94 -- -- 0.182 -- 7.929 9 -- --
42.21 0.303 12.1 -- 1.6 0.815 -- -- 0.089 22.8 9.09 17 -- --
439.28 0.979 12.1 0.546 -- -- -- -- 0.111 -- -- -- -- --
53.35 0.342 12.2 -- 2.51 -- -- -- 0.0344 23.2 -- -- -- --
74.1 0.401 12.1 -- -- 1.94 -- -- 0.127 -- 8.22 9 -- --
447.16 0.987 12.1 -- -- -- -- -- 0.0499 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.59 radiation 1.0 30 < th dose dependent sin 1 NA
2 31.78 radiation 1.0 30 < th dose independent sin 1 NA
3 31.85 radiation 1.0 30 > th dose independent sin 1 NA
4 32.11 radiation 1.0 30 < th dose independent rect. 2 18
6 32.29 radiation 10.0 30 < th dose dependent rect. 2 18
8 32.30 radiation 10.0 10 < th dose dependent rect. 7 23
13 32.47 radiation 40.0 90 < th dose dependent rect. 15 14
23 32.76 radiation 1.0 30 > th dose independent rect. 5 12
35 32.78 radiation 10.0 10 < th dose dependent rect. 14 23
83 33.23 radiation 10.0 10 < th dose dependent rect. 14 16
95 33.29 radiation 10.0 30 < th dose dependent no NA NA
98 33.30 radiation 10.0 30 < th dose dependent rect. 11 23
100 33.33 radiation 20.0 90 < th dose independent rect. 15 14
120 33.50 precipitation 0.1 270 < th dose independent rect. 3 11
122 33.50 precipitation 0.1 270 < th dose dependent rect. 3 11
132 33.63 temperature 20.0 90 > th dose independent rect. 1 4
160 33.69 radiation 10.0 30 < th dose dependent rect. 17 23
195 33.87 temperature 20.0 90 > th dose dependent rect. 1 4
222 34.19 temperature 20.0 10 > th dose independent rect. 2 3
224 34.21 temperature 10.0 270 > th dose independent rect. 3 11
225 34.21 atmosphere 995.0 270 > th dose independent rect. 3 11
226 34.21 atmosphere 1015.0 270 < th dose independent rect. 3 11
227 34.21 temperature 10.0 270 > th dose independent rect. 14 13
271 34.37 radiation 40.0 270 < th dose independent rect. 14 13
278 34.42 wind 9.0 270 < th dose independent rect. 14 13
283 34.46 radiation 10.0 30 < th dose dependent rect. 21 23
302 34.58 precipitation 0.1 90 < th dose independent rect. 5 10
303 34.58 wind 9.0 270 < th dose independent rect. 3 11
304 34.58 temperature 20.0 270 > th dose dependent rect. 1 1
305 34.58 precipitation 0.1 90 < th dose dependent rect. 5 10
340 34.70 temperature 10.0 90 > th dose independent rect. 5 10
341 34.70 atmosphere 1015.0 90 < th dose independent rect. 5 10
346 34.72 temperature 20.0 90 > th dose independent rect. 16 13
356 34.77 atmosphere 995.0 90 > th dose independent rect. 5 10
385 34.87 wind 9.0 90 < th dose independent rect. 5 10
407 34.99 temperature 20.0 270 > th dose independent rect. 1 1
415 35.02 humidity 50.0 270 > th dose independent rect. 3 11
438 35.12 precipitation 0.1 270 < th dose independent rect. 14 13
439 35.12 precipitation 0.1 270 < th dose dependent rect. 14 13
441 35.13 radiation 10.0 30 < th dose dependent rect. 2 14
442 35.14 atmosphere 995.0 90 > th dose independent rect. 15 14
446 35.15 radiation 10.0 10 < th dose dependent rect. 2 11
458 35.19 temperature 10.0 90 > th dose dependent rect. 16 13
474 35.25 humidity 50.0 90 > th dose independent rect. 5 10
493 35.33 temperature 10.0 270 > th dose dependent rect. 23 10
498 35.35 radiation 1.0 30 < th dose independent rect. 2 12
514 35.41 radiation 1.0 30 < th dose independent rect. 2 10
552 35.52 radiation 1.0 30 < th dose independent rect. 2 6
567 35.56 radiation 1.0 30 < th dose independent rect. 2 4
594 35.65 wind 9.0 720 < th dose independent rect. 19 12
610 35.70 precipitation 0.1 720 < th dose independent rect. 19 12
611 35.70 precipitation 0.1 720 < th dose dependent rect. 19 12
614 35.71 radiation 30.0 10 < th dose dependent rect. 9 11
627 35.74 humidity 70.0 10 > th dose dependent rect. 2 18
696 35.86 temperature 10.0 720 > th dose independent rect. 7 12
697 35.86 temperature 10.0 720 > th dose independent rect. 19 12
698 35.86 temperature 30.0 720 < th dose independent rect. 19 12
699 35.86 humidity 50.0 720 > th dose independent rect. 19 12
700 35.86 atmosphere 995.0 720 > th dose independent rect. 19 12
701 35.86 atmosphere 1015.0 720 < th dose independent rect. 7 12
702 35.86 radiation 40.0 720 < th dose independent rect. 19 12
726 35.92 radiation 1.0 30 < th dose dependent rect. 2 6
767 36.00 radiation 1.0 30 < th dose dependent rect. 2 4
782 36.04 temperature 10.0 270 > th dose independent rect. 23 11
783 36.04 humidity 50.0 270 > th dose independent rect. 23 11
784 36.04 atmosphere 995.0 270 > th dose independent rect. 23 11
785 36.04 temperature 10.0 270 > th dose independent rect. 10 13
801 36.08 wind 9.0 270 < th dose independent rect. 23 11
837 36.15 precipitation 0.1 720 < th dose independent rect. 19 20
840 36.15 humidity 50.0 10 > th dose dependent rect. 2 18
843 36.15 precipitation 0.1 720 < th dose dependent rect. 19 20
848 36.17 radiation 40.0 720 < th dose independent rect. 15 4
862 36.19 radiation 10.0 30 < th dose independent rect. 7 23
903 36.26 precipitation 0.1 270 < th dose independent rect. 10 13
907 36.26 precipitation 0.1 270 < th dose dependent rect. 10 13
915 36.29 atmosphere 1015.0 90 < th dose independent rect. 15 14
953 36.37 atmosphere 1015.0 270 < th dose independent rect. 23 11
974 36.40 precipitation 0.1 720 < th dose independent rect. 17 1
975 36.40 wind 1.0 90 > th dose independent rect. 5 10
976 36.40 precipitation 0.1 720 < th dose dependent rect. 17 1