Os02g0685600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2C-like.
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Os02g0685600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2C-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.64 | 0.483 | 8.37 | -1.28 | 4.1 | -2.53 | 0.152 | 0.345 | -0.113 | 0.0383 | 32.2 | 254 | 5.03 | 20 |
| 105.71 | 0.479 | 8.36 | -1.25 | 4.09 | -2.5 | 0.204 | -- | -0.102 | 0.0295 | 32.3 | 257 | 5.03 | 19.8 |
| 105.68 | 0.479 | 8.36 | -1.28 | 4.09 | -2.52 | -- | 0.387 | -0.103 | 0.0156 | 32.55 | 252 | 5.03 | 19.9 |
| 105.73 | 0.479 | 8.36 | -1.22 | 4.09 | -2.51 | -- | -- | -0.0983 | 0.0286 | 32.18 | 259 | 5.02 | 19.7 |
| 201.35 | 0.661 | 8.18 | -0.6 | -- | -3.9 | -- | 3.08 | 0.352 | -- | 89.32 | 320 | 4.87 | 9.62 |
| 221.71 | 0.698 | 8.27 | -0.624 | 3.99 | -- | 0.102 | -- | 0.286 | 0.169 | -- | -- | -- | -- |
| 221.75 | 0.697 | 8.27 | -0.628 | 3.99 | -- | -- | -- | 0.285 | 0.169 | -- | -- | -- | -- |
| 122.23 | 0.515 | 8.25 | -1.12 | -- | -5.11 | -- | -- | 0.0942 | -- | 47.92 | 320 | 5.02 | 9.53 |
| 138.25 | 0.548 | 8.33 | -- | 3.91 | -2.29 | -- | -- | 0.127 | 23.6 | 39.55 | 264 | 5.03 | 19.6 |
| 1224.17 | 1.63 | 8.19 | -0.499 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 232.16 | 0.713 | 8.25 | -- | 3.98 | -- | -- | -- | 0.355 | 0.16 | -- | -- | -- | -- |
| 142.43 | 0.556 | 8.24 | -- | -- | -5.01 | -- | -- | 0.164 | -- | 52.28 | 377 | 4.3 | 9.85 |
| 1230.74 | 1.64 | 8.17 | -- | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 6 | 112.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 7 | 112.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 68 | 126.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 19 |
| 120 | 131.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 147 | 132.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 213 | 135.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 216 | 135.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 239 | 135.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 240 | 135.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 250 | 135.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 272 | 135.55 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 283 | 135.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 351 | 135.92 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 362 | 135.98 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 845 | 137.89 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 867 | 137.94 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 880 | 137.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 909 | 138.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 948 | 138.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 957 | 138.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 973 | 138.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |