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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0684800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0307) R2 : 6.58e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00112 (0.0647) R2dN8 : 8.5e-07 R2N8 : 6.58e-07
σ : 0.578
deviance : 153.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.35 0.547 3.27 -0.0597 0.00911 0.573 -0.439 -0.319 0.0829 3.2 82.22 96 -- --
135.6 0.542 3.27 -0.0811 0.0123 0.56 -0.573 -- 0.0728 3.07 82.38 94 -- --
135.63 0.542 3.27 -0.0333 0.0513 0.556 -- -0.592 0.084 23.6 82.42 98 -- --
136.84 0.545 3.26 -0.0656 0.0357 0.546 -- -- 0.078 22.6 82.12 96 -- --
135.74 0.543 3.27 -0.0367 -- 0.574 -- -0.566 0.0861 -- 82 96 -- --
144.76 0.564 3.28 -0.0237 0.385 -- -0.39 -- -0.0112 3.22 -- -- -- --
145.25 0.564 3.28 -0.016 0.383 -- -- -- -0.00887 3.17 -- -- -- --
136.91 0.545 3.26 -0.0654 -- 0.554 -- -- 0.0794 -- 82 95 -- --
136.95 0.545 3.26 -- 0.0353 0.542 -- -- 0.085 22.5 82 96 -- --
153.6 0.579 3.28 0.000345 -- -- -- -- 0.00116 -- -- -- -- --
145.26 0.564 3.28 -- 0.383 -- -- -- -0.0071 3.17 -- -- -- --
137.02 0.545 3.26 -- -- 0.549 -- -- 0.0857 -- 82 95 -- --
153.6 0.578 3.28 -- -- -- -- -- 0.00112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.52 precipitation 0.1 1440 < th dose independent rect. 21 6
2 126.52 precipitation 0.1 1440 < th dose dependent rect. 21 6
3 127.53 humidity 80.0 30 > th dose dependent rect. 5 15
4 127.70 humidity 80.0 30 > th dose dependent rect. 5 8
5 127.74 temperature 15.0 90 > th dose independent rect. 6 23
9 128.27 temperature 15.0 270 > th dose independent rect. 6 20
12 128.58 humidity 80.0 30 > th dose dependent rect. 5 13
18 128.72 temperature 15.0 30 > th dose independent rect. 20 9
22 128.85 humidity 80.0 90 > th dose dependent sin 2 NA
42 129.34 humidity 90.0 90 < th dose independent rect. 7 10
49 129.45 temperature 15.0 270 > th dose independent rect. 6 9
51 129.52 humidity 90.0 90 > th dose independent rect. 4 16
52 129.55 wind 1.0 10 > th dose independent rect. 20 9
57 129.75 humidity 80.0 10 > th dose dependent sin 1 NA
66 130.03 radiation 10.0 30 < th dose independent rect. 5 15
70 130.13 humidity 90.0 30 > th dose dependent sin 23 NA
76 130.16 atmosphere 1010.0 30 < th dose independent rect. 20 9
86 130.29 humidity 80.0 10 > th dose independent rect. 5 8
93 130.44 radiation 20.0 30 < th dose dependent rect. 5 15
101 130.60 humidity 90.0 10 > th dose independent sin 0 NA
102 130.60 precipitation 0.1 30 < th dose independent rect. 20 9
103 130.60 precipitation 0.1 30 < th dose dependent rect. 20 9
105 130.64 radiation 20.0 4320 < th dose independent rect. 21 9
114 130.73 humidity 90.0 90 > th dose independent rect. 4 10
117 130.76 humidity 50.0 30 > th dose dependent rect. 5 15
132 130.84 temperature 30.0 30 < th dose independent rect. 20 9
133 130.84 humidity 50.0 30 > th dose independent rect. 20 9
136 130.84 atmosphere 995.0 30 > th dose independent rect. 20 9
137 130.84 radiation 1.0 30 < th dose independent rect. 20 9
143 130.84 temperature 10.0 30 > th dose independent rect. 5 15
145 130.84 atmosphere 1015.0 30 < th dose independent rect. 5 15
146 130.84 radiation 10.0 30 < th dose dependent rect. 20 9
155 130.94 wind 9.0 30 < th dose independent rect. 20 9
163 131.00 temperature 15.0 270 > th dose independent rect. 20 15
164 131.01 atmosphere 995.0 30 > th dose independent rect. 5 15
169 131.06 humidity 90.0 270 < th dose independent rect. 4 10
171 131.07 humidity 90.0 10 < th dose independent rect. 7 22
175 131.17 precipitation 0.1 30 < th dose independent rect. 5 15
176 131.17 precipitation 0.1 30 < th dose dependent rect. 5 15
179 131.19 temperature 15.0 270 > th dose independent rect. 7 16
208 131.44 radiation 20.0 30 < th dose dependent rect. 5 3
209 131.46 humidity 50.0 30 > th dose independent rect. 5 15
248 131.61 humidity 90.0 270 > th dose independent rect. 2 17
257 131.63 radiation 10.0 30 < th dose independent rect. 5 3
264 131.67 humidity 90.0 10 < th dose independent rect. 20 21
269 131.70 humidity 90.0 10 < th dose independent sin 0 NA
293 131.83 radiation 1.0 270 > th dose independent rect. 6 9
306 131.92 humidity 90.0 90 < th dose independent sin 1 NA
311 131.93 humidity 80.0 10 > th dose independent rect. 2 11
317 131.95 wind 9.0 30 < th dose independent rect. 5 15
335 132.04 humidity 70.0 30 > th dose dependent rect. 5 3
336 132.04 temperature 10.0 30 > th dose dependent rect. 20 9
337 132.04 humidity 80.0 270 > th dose dependent rect. 2 12
341 132.06 humidity 90.0 270 > th dose independent rect. 2 12
342 132.06 humidity 80.0 270 > th dose dependent rect. 2 10
344 132.07 wind 1.0 10 > th dose independent rect. 7 22
345 132.08 humidity 90.0 10 < th dose independent rect. 20 18
371 132.23 humidity 90.0 270 > th dose independent rect. 2 10
428 132.41 temperature 15.0 270 > th dose independent rect. 18 21
436 132.50 humidity 90.0 90 > th dose independent rect. 4 19
439 132.51 humidity 90.0 270 < th dose independent sin 4 NA
456 132.56 atmosphere 1015.0 30 < th dose dependent rect. 20 9
464 132.61 humidity 80.0 30 > th dose independent rect. 5 3
470 132.64 humidity 80.0 90 > th dose dependent rect. 23 21
473 132.65 temperature 15.0 90 > th dose independent rect. 20 21
480 132.67 humidity 70.0 10 > th dose dependent rect. 2 11
488 132.71 humidity 70.0 10 > th dose dependent rect. 2 18
501 132.77 temperature 15.0 270 > th dose independent rect. 18 8
506 132.79 humidity 60.0 43200 < th dose independent rect. 4 8
538 132.87 humidity 90.0 90 > th dose dependent rect. 4 19
561 132.96 atmosphere 1010.0 30 < th dose independent rect. 5 2
563 132.96 radiation 1.0 270 < th dose independent rect. 2 9
578 132.99 temperature 10.0 10 > th dose dependent rect. 7 22
586 133.03 humidity 80.0 10 > th dose independent rect. 2 18
587 133.03 wind 5.0 90 < th dose dependent rect. 5 1
605 133.08 wind 3.0 90 < th dose independent rect. 5 1
630 133.16 wind 9.0 30 < th dose independent rect. 7 22
649 133.20 humidity 60.0 43200 > th dose independent rect. 4 7
658 133.21 humidity 80.0 10 < th dose independent rect. 1 13
666 133.22 precipitation 0.1 30 < th dose independent rect. 7 22
670 133.22 precipitation 0.1 30 < th dose dependent rect. 7 22
671 133.23 radiation 1.0 270 > th dose independent sin 3 NA
683 133.25 radiation 1.0 270 < th dose independent rect. 2 16
692 133.27 radiation 1.0 270 < th dose independent sin 3 NA
694 133.27 wind 7.0 270 < th dose independent rect. 6 8
752 133.39 precipitation 0.1 1440 > th dose independent rect. 21 6
757 133.39 precipitation 0.1 1440 > th dose dependent rect. 21 6
764 133.41 humidity 60.0 43200 > th dose independent rect. 8 3
775 133.42 atmosphere 1010.0 10 < th dose independent rect. 7 22
778 133.43 radiation 1.0 270 < th dose dependent rect. 2 9
800 133.47 temperature 10.0 43200 > th dose independent rect. 15 5
806 133.47 radiation 20.0 30 < th dose dependent rect. 5 7
825 133.50 wind 7.0 90 < th dose independent rect. 7 10
838 133.52 radiation 1.0 270 < th dose dependent rect. 2 16
840 133.53 radiation 1.0 90 > th dose independent rect. 18 12
884 133.58 temperature 15.0 30 > th dose independent rect. 20 6
886 133.58 radiation 1.0 270 > th dose independent rect. 17 22
894 133.60 precipitation 0.1 30 < th dose independent rect. 5 2
906 133.60 precipitation 0.1 30 < th dose dependent rect. 5 2
910 133.61 humidity 80.0 10 > th dose independent rect. 2 16
911 133.61 humidity 90.0 10 < th dose independent rect. 22 16
930 133.64 temperature 10.0 30 > th dose independent rect. 5 2
932 133.64 temperature 30.0 30 < th dose independent rect. 5 2
933 133.64 humidity 50.0 30 > th dose independent rect. 5 2
936 133.64 atmosphere 995.0 30 > th dose independent rect. 5 2
975 133.70 humidity 80.0 90 > th dose dependent rect. 23 13
985 133.72 humidity 90.0 90 < th dose independent rect. 7 18