FiT-DB / Search/ Help/ Sample detail

Os02g0684600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.23 (0.0222) R2 : 0.571
β1 : 1.61 (0.0813) R2dD : 0.383 R2D : 0.308
β2 : 0.72 (0.0553) R2dC : 0.16 R2C : 0.155
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.416 (0.0474) R2dN8 : 0.0969 R2N8 : 0.016
σ : 0.418
deviance : 79.54
__
_____
C
peak time of C : 3.08
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.9 0.379 9.24 1.74 0.474 -1.21 -0.356 1.68 0.349 1.83 69.15 299 -- --
66.1 0.379 9.25 1.7 0.486 -0.97 -0.546 -- 0.362 1.73 70.21 324 -- --
65.31 0.376 9.24 1.76 0.477 -1.23 -- 2 0.347 1.98 69.02 293 -- --
67.35 0.382 9.25 1.71 0.489 -0.937 -- -- 0.363 1.93 70.2 324 -- --
73.58 0.4 9.23 1.79 -- -1.38 -- 1.73 0.385 -- 76 247 -- --
79.41 0.418 9.23 1.61 0.72 -- -0.2 -- 0.415 3.03 -- -- -- --
79.54 0.418 9.23 1.61 0.72 -- -- -- 0.416 3.08 -- -- -- --
76.05 0.406 9.24 1.73 -- -1.16 -- -- 0.387 -- 78.87 231 -- --
143.11 0.557 9.29 -- 0.575 -0.609 -- -- 0.221 2.06 73.43 320 -- --
109.14 0.488 9.23 1.64 -- -- -- -- 0.434 -- -- -- -- --
148.01 0.569 9.27 -- 0.752 -- -- -- 0.236 3.09 -- -- -- --
153.17 0.576 9.27 -- -- -0.951 -- -- 0.254 -- 128.8 128 -- --
180.3 0.627 9.27 -- -- -- -- -- 0.252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.67 temperature 15.0 270 > th dose independent rect. 17 9
4 57.42 humidity 60.0 270 > th dose independent rect. 7 19
5 57.51 humidity 60.0 270 > th dose independent rect. 6 21
9 58.16 humidity 60.0 270 > th dose independent rect. 7 16
19 59.06 radiation 40.0 270 < th dose dependent rect. 7 19
20 59.09 radiation 40.0 270 < th dose independent rect. 18 19
23 59.24 radiation 40.0 270 < th dose independent rect. 7 6
27 59.28 temperature 15.0 270 > th dose independent rect. 18 19
29 59.63 radiation 30.0 270 < th dose independent rect. 7 19
30 59.66 temperature 15.0 1440 > th dose independent rect. 10 6
47 60.17 humidity 60.0 270 > th dose independent rect. 17 22
61 60.53 humidity 80.0 270 < th dose dependent rect. 13 4
71 60.65 radiation 10.0 270 < th dose independent rect. 17 9
75 60.70 humidity 50.0 270 > th dose independent rect. 17 9
80 60.79 temperature 15.0 270 > th dose independent rect. 16 23
85 60.88 radiation 1.0 90 < th dose dependent sin 13 NA
89 60.95 radiation 20.0 270 < th dose dependent rect. 17 9
96 61.02 humidity 60.0 270 > th dose independent rect. 7 7
101 61.05 radiation 1.0 90 < th dose independent sin 13 NA
104 61.05 humidity 60.0 270 > th dose independent rect. 6 9
105 61.05 humidity 80.0 270 < th dose dependent rect. 14 2
116 61.11 radiation 40.0 90 < th dose independent rect. 9 6
125 61.23 wind 9.0 270 < th dose independent rect. 17 9
129 61.27 temperature 30.0 270 < th dose independent rect. 17 20
141 61.36 temperature 30.0 270 < th dose independent rect. 7 19
145 61.39 temperature 15.0 1440 > th dose independent rect. 16 4
146 61.39 temperature 30.0 270 < th dose independent rect. 17 9
152 61.40 temperature 10.0 270 > th dose independent rect. 2 15
153 61.40 atmosphere 1015.0 270 < th dose independent rect. 2 15
159 61.44 temperature 10.0 270 > th dose dependent rect. 13 4
190 61.61 precipitation 0.1 270 < th dose independent rect. 2 15
191 61.61 precipitation 0.1 270 < th dose dependent rect. 2 15
204 61.73 temperature 10.0 43200 > th dose independent rect. 10 6
209 61.76 atmosphere 995.0 270 > th dose independent rect. 17 9
228 61.90 wind 9.0 270 < th dose independent rect. 2 15
242 62.02 precipitation 0.1 270 < th dose independent rect. 17 9
243 62.02 precipitation 0.1 270 < th dose dependent rect. 17 9
257 62.15 temperature 30.0 270 < th dose independent rect. 7 16
263 62.19 radiation 1.0 90 > th dose independent sin 13 NA
269 62.22 temperature 30.0 270 < th dose independent rect. 6 7
274 62.26 temperature 15.0 270 > th dose dependent rect. 15 1
278 62.28 radiation 1.0 90 > th dose independent rect. 15 16
279 62.28 radiation 40.0 270 < th dose dependent rect. 7 6
282 62.30 temperature 15.0 10 > th dose independent rect. 9 17
292 62.37 wind 1.0 270 > th dose independent rect. 13 5
310 62.49 temperature 15.0 270 > th dose independent rect. 7 18
325 62.55 atmosphere 1010.0 270 < th dose independent rect. 18 8
334 62.58 humidity 70.0 270 < th dose dependent rect. 11 21
336 62.59 temperature 15.0 10 > th dose independent rect. 20 19
337 62.59 atmosphere 1015.0 270 < th dose dependent rect. 13 4
342 62.61 humidity 80.0 90 < th dose dependent rect. 15 17
345 62.62 temperature 30.0 90 < th dose independent rect. 9 18
347 62.63 humidity 70.0 270 < th dose independent rect. 14 3
365 62.68 temperature 10.0 270 > th dose independent rect. 6 7
366 62.68 atmosphere 995.0 270 > th dose independent rect. 6 7
367 62.68 atmosphere 1015.0 270 < th dose independent rect. 6 7
369 62.68 temperature 10.0 270 > th dose independent rect. 13 17
373 62.69 precipitation 0.1 270 < th dose independent rect. 6 7
375 62.69 precipitation 0.1 270 < th dose dependent rect. 6 7
380 62.72 wind 9.0 270 < th dose independent rect. 6 7
399 62.79 humidity 70.0 270 < th dose independent rect. 13 5
404 62.81 temperature 10.0 270 > th dose dependent rect. 18 8
430 62.88 radiation 1.0 270 > th dose independent rect. 13 17
436 62.91 humidity 90.0 270 < th dose independent rect. 13 4
443 62.92 wind 1.0 270 > th dose independent rect. 13 17
451 62.94 atmosphere 1015.0 90 < th dose dependent rect. 15 4
457 62.96 radiation 1.0 90 > th dose independent rect. 7 8
475 62.98 temperature 10.0 270 > th dose independent rect. 13 5
477 62.98 atmosphere 1010.0 270 < th dose independent rect. 13 5
486 62.99 wind 9.0 270 < th dose independent rect. 18 19
498 63.03 wind 9.0 270 < th dose independent rect. 13 17
500 63.03 atmosphere 995.0 270 > th dose independent rect. 18 19
503 63.04 temperature 15.0 1440 > th dose independent rect. 14 6
521 63.11 precipitation 0.1 270 < th dose independent rect. 13 17
523 63.11 precipitation 0.1 270 < th dose dependent rect. 13 17
524 63.12 precipitation 0.1 270 < th dose independent rect. 13 5
528 63.12 precipitation 0.1 270 < th dose dependent rect. 13 5
531 63.14 radiation 20.0 4320 > th dose independent rect. 6 3
574 63.19 temperature 10.0 90 > th dose independent rect. 15 16
587 63.23 radiation 1.0 270 > th dose independent rect. 13 4
619 63.30 radiation 40.0 90 < th dose independent rect. 15 16
623 63.31 temperature 10.0 30 > th dose dependent rect. 15 18
632 63.34 wind 9.0 270 < th dose independent rect. 13 5
639 63.37 temperature 10.0 10 > th dose independent rect. 9 6
643 63.37 atmosphere 995.0 10 > th dose independent rect. 9 6
645 63.37 atmosphere 1015.0 10 < th dose independent rect. 9 6
649 63.37 temperature 10.0 10 > th dose independent rect. 15 18
655 63.38 precipitation 0.1 270 < th dose independent rect. 18 19
658 63.38 precipitation 0.1 270 < th dose dependent rect. 18 19
664 63.39 temperature 10.0 1440 > th dose independent rect. 16 18
683 63.42 radiation 1.0 270 > th dose independent rect. 11 20
697 63.44 wind 9.0 10 < th dose independent rect. 9 6
725 63.48 radiation 1.0 30 > th dose independent rect. 9 6
726 63.48 radiation 1.0 270 > th dose independent rect. 13 6
737 63.48 temperature 10.0 270 > th dose dependent rect. 12 19
738 63.49 wind 9.0 30 < th dose independent rect. 15 18
742 63.49 temperature 10.0 90 > th dose dependent rect. 15 16
782 63.57 radiation 1.0 270 > th dose dependent sin 14 NA
790 63.59 wind 9.0 90 < th dose independent rect. 15 16
813 63.62 humidity 70.0 270 < th dose independent rect. 15 1
828 63.65 temperature 25.0 720 > th dose dependent rect. 20 17
829 63.66 radiation 40.0 43200 < th dose independent rect. 16 5
838 63.68 humidity 90.0 270 < th dose independent rect. 15 1
879 63.75 temperature 25.0 720 > th dose dependent sin 7 NA
886 63.76 radiation 40.0 270 < th dose dependent rect. 18 19
892 63.78 temperature 20.0 270 > th dose independent rect. 15 1
893 63.78 atmosphere 995.0 270 > th dose independent rect. 2 15
906 63.80 humidity 70.0 270 < th dose dependent sin 20 NA
932 63.84 temperature 10.0 90 > th dose independent rect. 15 4
934 63.84 atmosphere 1010.0 90 < th dose independent rect. 15 4
947 63.85 humidity 50.0 90 > th dose dependent rect. 9 18
960 63.88 radiation 1.0 270 > th dose independent rect. 15 1
963 63.88 radiation 1.0 270 > th dose dependent rect. 14 17
969 63.89 wind 9.0 270 < th dose independent rect. 16 23
981 63.92 humidity 60.0 270 > th dose independent sin 20 NA
982 63.92 wind 1.0 270 > th dose independent rect. 15 1
996 63.92 humidity 50.0 270 > th dose dependent rect. 7 19